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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Pax6 paired box gene 6 MGI:97490 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs33198906 MPD | dbSNP | MGI SNP Detail | Chr2:105514622 | f | Pax6 : Locus-Region | 1 | SNP | T | T | C | T | C/T | |||||||||||||
| rs29623599 MPD | dbSNP | MGI SNP Detail | Chr2:105515217 | f | Pax6 : Locus-Region | 1 | SNP | T | T | A | A | A/T | |||||||||||||
| rs33711680 MPD | dbSNP | MGI SNP Detail | Chr2:105521913 | f | Pax6 : Intron | 1 | SNP | A | G | A | G | A/G | |||||||||||||
| rs33369601 MPD | dbSNP | MGI SNP Detail | Chr2:105523578 | f | Pax6 : Intron | 1 | SNP | T | A | A | A/T | ||||||||||||||
| rs29778303 MPD | dbSNP | MGI SNP Detail | Chr2:105524746 | f | Pax6 : Intron | 1 | SNP | T | A | T | A/T | ||||||||||||||
| rs29818548 MPD | dbSNP | MGI SNP Detail | Chr2:105527349 | f | Pax6 : Intron | 1 | SNP | A | G | A | A/G | ||||||||||||||
| rs33045977 MPD | dbSNP | MGI SNP Detail | Chr2:105527891 | f | Pax6 : Intron | 1 | SNP | G | T | G | G/T | ||||||||||||||
| rs33676769 MPD | dbSNP | MGI SNP Detail | Chr2:105528069 | f | Pax6 : Intron | 1 | SNP | G | G | C | G | C | C/G | ||||||||||||
| rs27444176 MPD | dbSNP | MGI SNP Detail | Chr2:105531923 | f | Pax6 : Intron | 1 | SNP | G | G | G | G | T | G | G | G | T | G | G | G | T | G | G/T | |||
| rs27444175 MPD | dbSNP | MGI SNP Detail | Chr2:105532513 | f | Pax6 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A/G | |||
| rs27444174 MPD | dbSNP | MGI SNP Detail | Chr2:105532830 | f | Pax6 : Intron | 1 | SNP | A | A | A | A | G | A | A | A | G | A | A | A | G | A | A/G | |||
| rs27444173 MPD | dbSNP | MGI SNP Detail | Chr2:105533116 | f | Pax6 : Intron | 2 | SNP | A | A | G | G | G | G | A | G | G | A | G | A | A | A | G | A | A/G | |
| rs27444172 MPD | dbSNP | MGI SNP Detail | Chr2:105533347 | f | Pax6 : Intron | 1 | SNP | C | C | C | C | G | G | C | C | G | C | C | C | G | C | C/G | |||
| rs32868365 MPD | dbSNP | MGI SNP Detail | Chr2:105533431 | f | Pax6 : Intron | 1 | SNP | G | G | G | A | A/G | |||||||||||||
| rs27444171 MPD | dbSNP | MGI SNP Detail | Chr2:105533590 | f | Pax6 : Intron | 1 | SNP | C | C | C | C | T | C | T | C | C | C | T | C | C/T | |||||
| rs27444170 MPD | dbSNP | MGI SNP Detail | Chr2:105533599 | f | Pax6 : Intron | 2 | SNP | T | T | C | C | C | T | T | T | C | T | T | T | T | T | T | T | C/T | |
| rs27444169 MPD | dbSNP | MGI SNP Detail | Chr2:105533651 | f | Pax6 : Intron | 1 | SNP | C | C | C | C | C | G | C | C | C | C | C | C | C | C | C/G | |||
| rs27444168 MPD | dbSNP | MGI SNP Detail | Chr2:105533666 | f | Pax6 : Intron | 1 | SNP | G | G | G | G | A | G | G | G | A | G | G | G | G | G | A/G | |||
| rs27429167 MPD | dbSNP | MGI SNP Detail | Chr2:105533822 | f | Pax6 : Intron | 1 | SNP | C | C | C | C | T | C | C | C | T | C | C | C | C | C | C/T | |||
| rs27429166 MPD | dbSNP | MGI SNP Detail | Chr2:105533861 | f | Pax6 : Intron | 1 | SNP | G | G | G | G | G | C | G | G | G | G | G | G | G | G | C/G | |||
| rs27429165 MPD | dbSNP | MGI SNP Detail | Chr2:105534009 | f | Pax6 : Intron | 1 | SNP | G | G | G | G | A | A | G | G | A | G | G | G | A | G | A/G | |||
| rs27429164 MPD | dbSNP | MGI SNP Detail | Chr2:105534245 | f | Pax6 : Intron | 1 | SNP | C | C | C | C | T | C | C | C | T | C | C | C | C | C | C/T | |||
| rs33138304 MPD | dbSNP | MGI SNP Detail | Chr2:105534352 | f | Pax6 : Intron | 1 | SNP | A | C | A | C | A/C | |||||||||||||
| rs27429163 MPD | dbSNP | MGI SNP Detail | Chr2:105535003 | f | Pax6 : Intron | 1 | SNP | T | T | T | T | C | C | T | T | C | T | T | C | T | C/T | ||||
| rs33410494 MPD | dbSNP | MGI SNP Detail | Chr2:105535018 | f | Pax6 : Intron | 1 | SNP | A | G | A | A/G | ||||||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs27429162 MPD | dbSNP | MGI SNP Detail | Chr2:105535116 | f | Pax6 : Intron | 1 | SNP | C | C | C | C | T | T | C | C | T | C | C | C | T | C | C/T | |||
| rs27429161 MPD | dbSNP | MGI SNP Detail | Chr2:105535184 | f | Pax6 : Intron | 1 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | A | A | A/G | |||
| rs27429160 MPD | dbSNP | MGI SNP Detail | Chr2:105535271 | f | Pax6 : Intron | 1 | SNP | A | A | A | A | G | G | A | A | G | A | A | A | G | A | A/G | |||
| rs27429159 MPD | dbSNP | MGI SNP Detail | Chr2:105535489 | f | Pax6 : Coding-Synonymous | 1 | SNP | A | G | G | G | G | G | G | A | G | A | A | A | G | A | A/G | |||
| rs27429158 MPD | dbSNP | MGI SNP Detail | Chr2:105535692 | f | Pax6 : Intron | 1 | SNP | T | T | T | T | A | A | T | A | T | T | T | A | T | A/T | ||||
| rs27429157 MPD | dbSNP | MGI SNP Detail | Chr2:105535788 | f | Pax6 : Intron | 1 | SNP | T | T | T | T | C | C | T | T | C | T | T | T | C | T | C/T | |||
| rs27429156 MPD | dbSNP | MGI SNP Detail | Chr2:105535813 | f | Pax6 : Intron | 1 | SNP | G | G | G | G | G | C | G | G | G | G | G | G | G | G | C/G | |||
| rs27429155 MPD | dbSNP | MGI SNP Detail | Chr2:105535836 | f | Pax6 : Intron | 1 | SNP | A | A | A | A | G | G | A | A | G | A | A | A | G | A | A/G | |||
| rs27429154 MPD | dbSNP | MGI SNP Detail | Chr2:105535862 | f | Pax6 : Intron | 1 | SNP | G | G | G | G | A | G | G | G | A | G | G | G | A | G | A/G | |||
| rs6231820 MPD | dbSNP | MGI SNP Detail | Chr2:105536086 | f | Pax6 : Intron | 2 | SNP | A | A | A | A | G | A | G | G | A | A | G | A | A | A | G | A | A/G | |
| rs27429153 MPD | dbSNP | MGI SNP Detail | Chr2:105536132 | f | Pax6 : Intron | 1 | SNP | T | T | T | T | C | C | T | T | C | T | T | T | C | T | C/T | |||
| rs27429152 MPD | dbSNP | MGI SNP Detail | Chr2:105536338 | f | Pax6 : Intron | 1 | SNP | A | A | A | A | C | C | A | A | C | A | A | A | C | A | A/C | |||
| rs27429151 MPD | dbSNP | MGI SNP Detail | Chr2:105536530 | f | Pax6 : mRNA-UTR | 1 | SNP | A | A | A | A | G | G | A | A | G | A | A | A | G | A | A/G |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 06/05/2013 MGI 5.13 |
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