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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Otx2 orthodenticle homolog 2 (Drosophila) MGI:97451 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs48946557 MPD | dbSNP | MGI SNP Detail | Chr14:49275737 | f | Otx2 : Locus-Region | 1 | SNP | T | C | T | C | C | T | C/T | |||||||||||||||
| rs46106806 MPD | dbSNP | MGI SNP Detail | Chr14:49276332 | f | Otx2 : Locus-Region | 1 | SNP | G | G | G | G | G | G | G | G | A | G | A | A | G | G | G | A/G | ||||||
| rs48704520 MPD | dbSNP | MGI SNP Detail | Chr14:49276394 | f | Otx2 : Locus-Region | 1 | SNP | A | A | A | A | A | A | A | G | A | G | A | A | G | A | A | A/G | ||||||
| rs48287989 MPD | dbSNP | MGI SNP Detail | Chr14:49276456 | f | Otx2 : Locus-Region | 1 | SNP | T | T | T | T | C | T | T | T | T | T | T | T | C/T | |||||||||
| rs46613103 MPD | dbSNP | MGI SNP Detail | Chr14:49277146 | f | Otx2 : Locus-Region | 1 | SNP | T | T | T | T | T | T | A | T | A | T | T | A | T | T | A/T | |||||||
| rs30798879 MPD | dbSNP | MGI SNP Detail | Chr14:49277302 | f | Otx2 : Locus-Region | 2 | SNP | T | T | T | T | T | T | C | C | T | T | C | T | C | C | T | T | T | C/T | ||||
| rs31501120 MPD | dbSNP | MGI SNP Detail | Chr14:49277500 | f | Otx2 : mRNA-UTR | 1 | SNP | T | T | A | T | A/T | |||||||||||||||||
| rs30192180 MPD | dbSNP | MGI SNP Detail | Chr14:49278792 | f | Otx2 : Coding-Synonymous | 1 | SNP | A | A | G | A | A/G | |||||||||||||||||
| rs30544845 MPD | dbSNP | MGI SNP Detail | Chr14:49278810 | f | Otx2 : Coding-Synonymous | 2 | SNP | G | G | G | G | A | G | G | A | G | A | A | G | G | A/G | ||||||||
| rs30554353 MPD | dbSNP | MGI SNP Detail | Chr14:49278856 | f | Otx2 : Coding-NonSynonymous | 1 | SNP | G | G | C | G | C/G | |||||||||||||||||
| rs52175934 MPD | dbSNP | MGI SNP Detail | Chr14:49279234 | f | Otx2 : Intron | 1 | SNP | T | T | T | T | T | C | T | C | C | C | C | C | C | C | C/T | |||||||
| rs31202309 MPD | dbSNP | MGI SNP Detail | Chr14:49279754 | f | Otx2 : Intron | 2 | SNP | T | T | T | T | T | T | C | T | T | T | C | T | C | C | T | T | T | C/T | ||||
| rs30893125 MPD | dbSNP | MGI SNP Detail | Chr14:49280026 | f | Otx2 : Intron | 1 | SNP | C | C | T | C | C/T | |||||||||||||||||
| rs31507902 MPD | dbSNP | MGI SNP Detail | Chr14:49280044 | f | Otx2 : Intron | 1 | SNP | T | T | C | C/T | ||||||||||||||||||
| rs30905344 MPD | dbSNP | MGI SNP Detail | Chr14:49280045 | f | Otx2 : Intron | 1 | SNP | C | C | T | C/T | ||||||||||||||||||
| rs47011554 MPD | dbSNP | MGI SNP Detail | Chr14:49280522 | f | Otx2 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | T | G | T | T | G | G | G | G/T | ||||||
| rs30304496 MPD | dbSNP | MGI SNP Detail | Chr14:49280561 | f | Otx2 : Intron | 1 | SNP | C | G | C | C/G | ||||||||||||||||||
| rs30996635 MPD | dbSNP | MGI SNP Detail | Chr14:49280630 | f | Otx2 : Intron | 1 | SNP | T | C | T | C/T | ||||||||||||||||||
| rs31523107 MPD | dbSNP | MGI SNP Detail | Chr14:49281091 | f | Otx2 : Coding-Synonymous | 2 | SNP | A | A | A | A | A | T | A | A | A | T | A | T | T | A | A | A | A/T | |||||
| rs31533221 MPD | dbSNP | MGI SNP Detail | Chr14:49281473 | f | Otx2 : Intron | 2 | SNP | C | C | C | C | C | C | T | C | C | C | T | C | T | T | C | C | C | C/T | ||||
| rs30295275 MPD | dbSNP | MGI SNP Detail | Chr14:49281508 | f | Otx2 : Intron | 2 | SNP | G | G | G | G | G | G | C | G | G | G | C | G | C | C | G | G | G | C/G | ||||
| rs51645689 MPD | dbSNP | MGI SNP Detail | Chr14:49282018 | f | Otx2 : Intron | 1 | SNP | C | C | C | C | C | C | C | T | C | T | C | C | T | C | C | C/T | ||||||
| rs30877041 MPD | dbSNP | MGI SNP Detail | Chr14:49282084 | f | Otx2 : Intron | 1 | SNP | G | G | T | G | G/T | |||||||||||||||||
| rs30204436 MPD | dbSNP | MGI SNP Detail | Chr14:49282346 | f | Otx2 : Intron | 1 | SNP | A | A | G | A | A/G | |||||||||||||||||
| rs8244142 MPD | dbSNP | MGI SNP Detail | Chr14:49282867 | r | Otx2 : Intron | 3 | SNP | C | C | C | C | C | C | C | T | C | C | T | C | C | T | T | C | C | C | C | C/T | ||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs8244140 MPD | dbSNP | MGI SNP Detail | Chr14:49282887 | r | Otx2 : Intron | 1 | IN-DEL | T | T | T | T | - | T | T | T | -/T | |||||||||||||
| rs8244141 MPD | dbSNP | MGI SNP Detail | Chr14:49282887 | r | Otx2 : Intron | 1 | IN-DEL | T | T | T | T | T | T | - | T | -/T | |||||||||||||
| rs8244139 MPD | dbSNP | MGI SNP Detail | Chr14:49283241 | r | Otx2 : Intron | 1 | IN-DEL | A | A | - | - | -/A | |||||||||||||||||
| rs51638239 MPD | dbSNP | MGI SNP Detail | Chr14:49283496 | f | Otx2 : Intron | 1 | SNP | T | T | T | T | T | T | T | T | C | T | C | C | T | T | C/T | |||||||
| rs8244138 MPD | dbSNP | MGI SNP Detail | Chr14:49283587 | r | Otx2 : Intron | 1 | SNP | T | T | T | T | C | T | C | T | C/T | |||||||||||||
| rs8244137 MPD | dbSNP | MGI SNP Detail | Chr14:49283599 | r | Otx2 : Intron | 1 | SNP | G | G | G | G | A | G | G | A/G | ||||||||||||||
| rs30541876 MPD | dbSNP | MGI SNP Detail | Chr14:49284853 | f | Otx2 : Locus-Region | 1 | SNP | G | A | G | A/G |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/08/2013 MGI 5.13 |
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