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Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Otx2
orthodenticle homeobox 2
MGI:97451

60 matching SNPs displayed
Full result set is also available in a tab-delimited format.
Include SNPs that map to multiple locations

Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs251387441
MPD | dbSNP | MGI SNP Detail
Chr14:48655808f 1SNP                 AG    A/G
rs222032551
MPD | dbSNP | MGI SNP Detail
Chr14:48655974f 1SNP                 TC    C/T
rs46585133
MPD | dbSNP | MGI SNP Detail
Chr14:48656020f 1SNPC               C      C
rs48946557
MPD | dbSNP | MGI SNP Detail
Chr14:48656062f 3SNPTC   T  C     CTTTT    C/T
rs51486233
MPD | dbSNP | MGI SNP Detail
Chr14:48656213f 2SNPT               TTT    T
rs52320406
MPD | dbSNP | MGI SNP Detail
Chr14:48656552f 1SNPA     A                A
rs46106806
MPD | dbSNP | MGI SNP Detail
Chr14:48656657f 3SNPGG GGGGGAGGGGAAG GG    A/G
rs48704520
MPD | dbSNP | MGI SNP Detail
Chr14:48656719f 2SNPAA AAAAGAAAGGAAA GA    A/G
rs48287989
MPD | dbSNP | MGI SNP Detail
Chr14:48656781f 1SNP C TT TTTTTTTTT        C/T
rs254561538
MPD | dbSNP | MGI SNP Detail
Chr14:48657231f 1SNP                 TT    T
rs223211741
MPD | dbSNP | MGI SNP Detail
Chr14:48657235f 1SNP                 CC    C
rs46613103
MPD | dbSNP | MGI SNP Detail
Chr14:48657471f 2SNPTT TTTTATT AATTT AT    A/T
rs30798879
MPD | dbSNP | MGI SNP Detail
Chr14:48657627f 4SNPTCCTTTTTCTTTTCCTTTT    C/T
rs232792174
MPD | dbSNP | MGI SNP Detail
Chr14:48657842f 1SNP                 TT    T
rs252642691
MPD | dbSNP | MGI SNP Detail
Chr14:48658377f 1SNP                 AC    A/C
rs30192180
MPD | dbSNP | MGI SNP Detail
Chr14:48659117f 3SNPA G   A         AAA    A/G
rs30544845
MPD | dbSNP | MGI SNP Detail
Chr14:48659135f 4SNPG A  GGGA GGGAAGGGG    A/G
rs30554353
MPD | dbSNP | MGI SNP Detail
Chr14:48659181f 3SNPG C   G         GGG    C/G
rs52175934
MPD | dbSNP | MGI SNP Detail
Chr14:48659559f 3SNPTC TTTTCC TCCCCCTCT    C/T
rs52217375
MPD | dbSNP | MGI SNP Detail
Chr14:48659691f 2SNP      A         AGA    A/G
rs31202309
MPD | dbSNP | MGI SNP Detail
Chr14:48660079f 4SNPTTCTTTTTCTTTTCCTTTT    C/T
rs247991589
MPD | dbSNP | MGI SNP Detail
Chr14:48660231f 1SNP                 TG    G/T
rs30893125
MPD | dbSNP | MGI SNP Detail
Chr14:48660351f 3SNPC T   C         CCC    C/T
rs31507902
MPD | dbSNP | MGI SNP Detail
Chr14:48660369f 3SNP  C   T         TCT    C/T
rs30905344
MPD | dbSNP | MGI SNP Detail
Chr14:48660370f 3SNP  T   C         CCC    C/T
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs47011554
MPD | dbSNP | MGI SNP Detail
Chr14:48660847f 2SNPGG GGGGGTGGGGTTG GG    G/T
rs30304496
MPD | dbSNP | MGI SNP Detail
Chr14:48660920f 1SNPC G   C                C/G
rs30996635
MPD | dbSNP | MGI SNP Detail
Chr14:48660955f 3SNPT C   T          TT    C/T
rs31523107
MPD | dbSNP | MGI SNP Detail
Chr14:48661416f 4SNPAATAAAAATAAAATTA AA    A/T
rs31533221
MPD | dbSNP | MGI SNP Detail
Chr14:48661798f 4SNPCCTCCCCCTCCCCTTCCCC    C/T
rs30295275
MPD | dbSNP | MGI SNP Detail
Chr14:48661833f 4SNPGGCGGGGGCGGGGCCGGGG    C/G
rs256976751
MPD | dbSNP | MGI SNP Detail
Chr14:48662090f 1SNP                 TC    C/T
rs51645689
MPD | dbSNP | MGI SNP Detail
Chr14:48662343f 3SNPCC CCCCTCCCTTCCCCTC    C/T
rs30877041
MPD | dbSNP | MGI SNP Detail
Chr14:48662409f 3SNPG T   G         GGT    G/T
rs51821647
MPD | dbSNP | MGI SNP Detail
Chr14:48662623f 2SNPG     G         GAG    A/G
rs30204436
MPD | dbSNP | MGI SNP Detail
Chr14:48662671f 3SNPA G   A         AGA    A/G
rs8244142
MPD | dbSNP | MGI SNP Detail
Chr14:48663192r 5SNPCCTCCCCCTCCC TTCCCCC CCC/T
rs8244141
MPD | dbSNP | MGI SNP Detail
Chr14:48663220r 1IN-DELTT T TT            T -T-/T
rs8244140
MPD | dbSNP | MGI SNP Detail
Chr14:48663223r 1IN-DELT- T TT            T TT-/T
rs8244139
MPD | dbSNP | MGI SNP Detail
Chr14:48663566r 1IN-DEL  A                A ---/A
rs51638239
MPD | dbSNP | MGI SNP Detail
Chr14:48663821f 3SNPTT TTTTTC TTTCCTTTT    C/T
rs8244138
MPD | dbSNP | MGI SNP Detail
Chr14:48663912r 3SNPTC T TT         TCTTTC C/T
rs8244137
MPD | dbSNP | MGI SNP Detail
Chr14:48663924r 1SNPGA G GG            G G A/G
rs52152078
MPD | dbSNP | MGI SNP Detail
Chr14:48664000f 1SNP                 TG    G/T
rs264328197
MPD | dbSNP | MGI SNP Detail
Chr14:48665040f 1SNP                 AC    A/C
rs30541876
MPD | dbSNP | MGI SNP Detail
Chr14:48665178f 2SNPG A             GAG    A/G
rs234215269
MPD | dbSNP | MGI SNP Detail
Chr14:48666068f 1SNP                 GT    G/T
rs31237610
MPD | dbSNP | MGI SNP Detail
Chr14:48666494f 3SNPA G   A          GA    A/G
rs31464452
MPD | dbSNP | MGI SNP Detail
Chr14:48666803f 4SNPTCCTTTTCCTTCCCC TCT    C/T
rs238339850
MPD | dbSNP | MGI SNP Detail
Chr14:48667942f 1SNP                 AG    A/G
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs47760407
MPD | dbSNP | MGI SNP Detail
Chr14:48668136f 2SNP      A          AA    A
rs48602831
MPD | dbSNP | MGI SNP Detail
Chr14:48668312f 2SNP      G          GG    G
rs49874208
MPD | dbSNP | MGI SNP Detail
Chr14:48668449f 2SNPGG GGGGGCGGGGCCG GG    C/G
rs47854907
MPD | dbSNP | MGI SNP Detail
Chr14:48668482f 1SNP C   G  C    CC        C/G
rs266086484
MPD | dbSNP | MGI SNP Detail
Chr14:48668548f 1SNP                 GA    A/G
rs232887603
MPD | dbSNP | MGI SNP Detail
Chr14:48668663f 1SNP                 GA    A/G
rs256272813
MPD | dbSNP | MGI SNP Detail
Chr14:48668996f 1SNP                 GC    C/G
rs46500471
MPD | dbSNP | MGI SNP Detail
Chr14:48669037f 2SNPT     T         TTT    T
rs45808419
MPD | dbSNP | MGI SNP Detail
Chr14:48669071f 1SNPA     A         A      A
rs51954470
MPD | dbSNP | MGI SNP Detail
Chr14:48669074f 2SNPC     C         CGC    C/G

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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
06/15/2016
MGI 6.04
The Jackson Laboratory