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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Col1a2 collagen, type I, alpha 2 MGI:88468 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs30517328 MPD | dbSNP | MGI SNP Detail | Chr6:4454540 | f | Col1a2 : Locus-Region | 1 | SNP | G | G | T | G | G/T | ||
| rs30515437 MPD | dbSNP | MGI SNP Detail | Chr6:4456528 | f | Col1a2 : Intron | 1 | SNP | C | C | T | C | C/T | ||
| rs30064148 MPD | dbSNP | MGI SNP Detail | Chr6:4458700 | f | Col1a2 : Intron | 1 | SNP | A | A | G | A/G | |||
| rs6186117 MPD | dbSNP | MGI SNP Detail | Chr6:4459941 | f | Col1a2 : Intron | 1 | SNP | C | T | C/T | ||||
| rs6186547 MPD | dbSNP | MGI SNP Detail | Chr6:4459963 | f | Col1a2 : Intron | 2 | SNP | C | C | T | C | C | C/T | |
| rs6199303 MPD | dbSNP | MGI SNP Detail | Chr6:4460065 | f | Col1a2 : Intron | 1 | SNP | A | G | A/G | ||||
| rs6199900 MPD | dbSNP | MGI SNP Detail | Chr6:4460209 | f | Col1a2 : Intron | 1 | SNP | C | T | C/T | ||||
| rs6200457 MPD | dbSNP | MGI SNP Detail | Chr6:4460313 | f | Col1a2 : Intron | 1 | SNP | C | T | C/T | ||||
| rs30666252 MPD | dbSNP | MGI SNP Detail | Chr6:4461895 | f | Col1a2 : Intron | 1 | SNP | T | T | T | G | G/T | ||
| rs30119906 MPD | dbSNP | MGI SNP Detail | Chr6:4464195 | f | Col1a2 : Intron | 1 | SNP | A | A | T | A | A/T | ||
| rs6275208 MPD | dbSNP | MGI SNP Detail | Chr6:4464790 | f | Col1a2 : Intron | 1 | SNP | G | A | A/G | ||||
| rs30907113 MPD | dbSNP | MGI SNP Detail | Chr6:4465294 | f | Col1a2 : Intron | 1 | SNP | C | C | A | C | A/C | ||
| rs30519867 MPD | dbSNP | MGI SNP Detail | Chr6:4465717 | f | Col1a2 : Intron | 1 | SNP | G | G | T | G/T | |||
| rs30119445 MPD | dbSNP | MGI SNP Detail | Chr6:4466038 | f | Col1a2 : Intron | 1 | SNP | G | G | G | T | G/T | ||
| rs30949223 MPD | dbSNP | MGI SNP Detail | Chr6:4466068 | f | Col1a2 : Intron | 1 | SNP | C | C | C | G | C/G | ||
| rs30564406 MPD | dbSNP | MGI SNP Detail | Chr6:4467941 | f | Col1a2 : Intron | 1 | SNP | G | G | A | G | A/G | ||
| rs30809337 MPD | dbSNP | MGI SNP Detail | Chr6:4469375 | f | Col1a2 : Intron | 1 | SNP | T | T | G | T | G/T | ||
| rs30562067 MPD | dbSNP | MGI SNP Detail | Chr6:4469715 | f | Col1a2 : Intron | 1 | SNP | C | A | C | A/C | |||
| rs30467654 MPD | dbSNP | MGI SNP Detail | Chr6:4469939 | f | Col1a2 : Intron | 1 | SNP | A | G | A | A/G | |||
| rs30611181 MPD | dbSNP | MGI SNP Detail | Chr6:4470165 | f | Col1a2 : Intron | 1 | SNP | T | T | C | T | C/T | ||
| rs30573489 MPD | dbSNP | MGI SNP Detail | Chr6:4470294 | f | Col1a2 : Intron | 1 | SNP | G | G | T | G/T | |||
| rs29886656 MPD | dbSNP | MGI SNP Detail | Chr6:4470346 | f | Col1a2 : Intron | 1 | SNP | G | A | A/G | ||||
| rs29880110 MPD | dbSNP | MGI SNP Detail | Chr6:4470412 | f | Col1a2 : Intron | 1 | SNP | G | A | A/G | ||||
| rs29921052 MPD | dbSNP | MGI SNP Detail | Chr6:4470671 | f | Col1a2 : Intron | 1 | SNP | A | A | G | A/G | |||
| rs30804543 MPD | dbSNP | MGI SNP Detail | Chr6:4470699 | f | Col1a2 : Intron | 1 | SNP | T | T | C | C/T | |||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | Allele Summary (all strains) |
| rs30119862 MPD | dbSNP | MGI SNP Detail | Chr6:4471557 | f | Col1a2 : Intron | 1 | SNP | C | C | T | C | C/T | ||
| rs30906868 MPD | dbSNP | MGI SNP Detail | Chr6:4471839 | f | Col1a2 : Intron | 1 | SNP | T | T | A | T | A/T | ||
| rs30214896 MPD | dbSNP | MGI SNP Detail | Chr6:4471948 | f | Col1a2 : Intron | 1 | SNP | T | T | C | T | C/T | ||
| rs30035607 MPD | dbSNP | MGI SNP Detail | Chr6:4473027 | f | Col1a2 : Coding-Synonymous | 1 | SNP | T | T | C | T | C/T | ||
| rs30070257 MPD | dbSNP | MGI SNP Detail | Chr6:4473660 | f | Col1a2 : Intron | 1 | SNP | T | T | T | G | T | G/T | |
| rs30170734 MPD | dbSNP | MGI SNP Detail | Chr6:4477999 | f | Col1a2 : Intron | 1 | SNP | A | T | T | A/T | |||
| rs30845823 MPD | dbSNP | MGI SNP Detail | Chr6:4485033 | f | Col1a2 : Intron | 1 | SNP | A | A | A | G | A | A/G | |
| rs6353520 MPD | dbSNP | MGI SNP Detail | Chr6:4487576 | f | Col1a2 : Intron | 1 | SNP | A | G | A/G | ||||
| rs6354093 MPD | dbSNP | MGI SNP Detail | Chr6:4487685 | f | Col1a2 : Intron | 1 | SNP | A | T | A/T | ||||
| rs6354459 MPD | dbSNP | MGI SNP Detail | Chr6:4487692 | f | Col1a2 : Intron | 1 | SNP | C | T | C/T | ||||
| rs13459049 MPD | dbSNP | MGI SNP Detail | Chr6:4490674 | f | Col1a2 : mRNA-UTR | 1 | SNP | A | A | C | A | A/C |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/08/2013 MGI 5.13 |
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