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Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Col2a1
collagen, type II, alpha 1
MGI:88452

147 matching SNPs displayed
Full result set is also available in a tab-delimited format.


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs36512871
MPD | dbSNP | MGI SNP Detail
Chr15:97974405f 1SNPAA A  AAAGAAAAAA             A/G
rs36874623
MPD | dbSNP | MGI SNP Detail
Chr15:97974595f 1SNPA  AA AATAAAAAAA             A/T
rs37590396
MPD | dbSNP | MGI SNP Detail
Chr15:97974924f 1SNPCT CC CCTCCCCCCC             C/T
rs36287985
MPD | dbSNP | MGI SNP Detail
Chr15:97974947f 1SNPGG GG GGGAGGGGGG             A/G
rs37701748
MPD | dbSNP | MGI SNP Detail
Chr15:97975156f 1SNPAG AA AAGGAAAAAA             A/G
rs36684784
MPD | dbSNP | MGI SNP Detail
Chr15:97975241f 1SNPAA AAAAAAGAAAAAA             A/G
rs36772835
MPD | dbSNP | MGI SNP Detail
Chr15:97975335f 1SNPCC CC CC TCCCCCC             C/T
rs36279001
MPD | dbSNP | MGI SNP Detail
Chr15:97975388f 1SNPGG GG GGGAGGGGGG             A/G
rs36651408
MPD | dbSNP | MGI SNP Detail
Chr15:97975517f 1SNPCT CC CCT CCCCCC             C/T
rs36426389
MPD | dbSNP | MGI SNP Detail
Chr15:97975552f 1SNPGG GG GGGAGGGGGG             A/G
rs36817232
MPD | dbSNP | MGI SNP Detail
Chr15:97975601f 1SNP G AA AAGGAAAAAA             A/G
rs36871854
MPD | dbSNP | MGI SNP Detail
Chr15:97975702f 1SNPGA GG GGAGGG GGG             A/G
rs36417513
MPD | dbSNP | MGI SNP Detail
Chr15:97976327f 1SNPCC CCCCCCTCCCCCC             C/T
rs38226501
MPD | dbSNP | MGI SNP Detail
Chr15:97976581f 1SNP   AA AAGGAA AAA             A/G
rs37075552
MPD | dbSNP | MGI SNP Detail
Chr15:97976828f 1SNPGG GG GGGAGGGGGG             A/G
rs38170175
MPD | dbSNP | MGI SNP Detail
Chr15:97976867f 1SNPGT GGGGGTGGGGGGG             G/T
rs37132766
MPD | dbSNP | MGI SNP Detail
Chr15:97976967f 1SNPAG  A AAGGAAAAGA             A/G
rs37472018
MPD | dbSNP | MGI SNP Detail
Chr15:97977032f 1SNPCT CC CCTCCCCCCC             C/T
rs36412302
MPD | dbSNP | MGI SNP Detail
Chr15:97977659f 1SNPCC CCTCCCTCCCCCC             C/T
rs39627005
MPD | dbSNP | MGI SNP Detail
Chr15:97977791f 1SNPGA GG GGAAGG G G             A/G
rs38653242
MPD | dbSNP | MGI SNP Detail
Chr15:97977836f 1SNPAG AA AAGGGAAAAG             A/G
rs36684645
MPD | dbSNP | MGI SNP Detail
Chr15:97978260f 1SNPGA GG GGAGGGGGGG             A/G
rs37069487
MPD | dbSNP | MGI SNP Detail
Chr15:97978762f 1SNPAG AA AAGAAAAAAA             A/G
rs37211379
MPD | dbSNP | MGI SNP Detail
Chr15:97978902f 1SNPGG GG GGGAGGGGGG             A/G
rs37176084
MPD | dbSNP | MGI SNP Detail
Chr15:97978988f 1SNPTT TT TTTTTTTTCT             C/T
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs36934583
MPD | dbSNP | MGI SNP Detail
Chr15:97979388f 1SNPAA AA AAAAGAAAAG             A/G
rs36293059
MPD | dbSNP | MGI SNP Detail
Chr15:97980281f 1SNPAA AA AAAGAAAAAA             A/G
rs37272538
MPD | dbSNP | MGI SNP Detail
Chr15:97980916f 1SNPCC CCCCCCCCCCCTC             C/T
rs36634709
MPD | dbSNP | MGI SNP Detail
Chr15:97981124f 1SNPCC CCCCCCCCCCCTC             C/T
rs37755764
MPD | dbSNP | MGI SNP Detail
Chr15:97981133f 1SNPTC TTTTTCCTTTT T             C/T
rs38012944
MPD | dbSNP | MGI SNP Detail
Chr15:97981340f 1SNPCT CCCCCCCCCCCCC             C/T
rs36295245
MPD | dbSNP | MGI SNP Detail
Chr15:97981348f 1SNPCC CCCCCCCTCCCCT             C/T
rs38675429
MPD | dbSNP | MGI SNP Detail
Chr15:97981469f 1SNPCC CCCCCCTCC CCC             C/T
rs38157163
MPD | dbSNP | MGI SNP Detail
Chr15:97981840f 1SNPCC CCCCCCCCCCCAC             A/C
rs37265300
MPD | dbSNP | MGI SNP Detail
Chr15:97981978f 1SNPCC CCCCC CCCCCAC             A/C
rs36517762
MPD | dbSNP | MGI SNP Detail
Chr15:97981989f 1SNPAA AAAAAAAGAAAAG             A/G
rs36360960
MPD | dbSNP | MGI SNP Detail
Chr15:97982339f 1SNPAG AAAAAGAAA AGA             A/G
rs37001458
MPD | dbSNP | MGI SNP Detail
Chr15:97982592f 1SNPGG G GG GA G                 A/G
rs32106023
MPD | dbSNP | MGI SNP Detail
Chr15:97982782f 4SNPGGAAGAAGGGGG GGGAGA          A/G
rs36745843
MPD | dbSNP | MGI SNP Detail
Chr15:97982862f 1SNPAG AAAAAGGAA A A             A/G
rs36613673
MPD | dbSNP | MGI SNP Detail
Chr15:97982999f 1SNPGA GGGGGAAGG GGG             A/G
rs37446739
MPD | dbSNP | MGI SNP Detail
Chr15:97983430f 1SNPAG AAAAAG AA AGA             A/G
rs32205535
MPD | dbSNP | MGI SNP Detail
Chr15:97983527f 4SNPT CC CC TTTT T  CTC          C/T
rs39015444
MPD | dbSNP | MGI SNP Detail
Chr15:97984073f 1SNPCC CCCCCCCC  CTC             C/T
rs36707572
MPD | dbSNP | MGI SNP Detail
Chr15:97984156f 1SNPGG GGGGGAGGG GGG             A/G
rs31808666
MPD | dbSNP | MGI SNP Detail
Chr15:97984699f 3SNPAGGGAGGAGGGA AGGGAG          A/G
rs36924459
MPD | dbSNP | MGI SNP Detail
Chr15:97984987f 1SNPGG GGGGGGAGG GGG             A/G
rs36350000
MPD | dbSNP | MGI SNP Detail
Chr15:97985164f 1SNPCC CCCCCCGCC CCC             C/G
rs36902281
MPD | dbSNP | MGI SNP Detail
Chr15:97985794f 1SNPCT CCCCCTT C CTT             C/T
rs37837419
MPD | dbSNP | MGI SNP Detail
Chr15:97986137f 1SNPCC CCCCCCTCC CCC             C/T
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs38160692
MPD | dbSNP | MGI SNP Detail
Chr15:97986401f 1SNPG  GGGGG AGG GAG             A/G
rs36240132
MPD | dbSNP | MGI SNP Detail
Chr15:97986476f 1SNPAA AAAAAAGAA AAA             A/G
rs36296770
MPD | dbSNP | MGI SNP Detail
Chr15:97986498f 1SNPGG GGG GGGGG GAG             A/G
rs37484019
MPD | dbSNP | MGI SNP Detail
Chr15:97986538f 1SNPGC GGGGGCCGG GGG             C/G
rs37014156
MPD | dbSNP | MGI SNP Detail
Chr15:97986612f 1SNPGA GGGGGAGGG GGG             A/G
rs36373832
MPD | dbSNP | MGI SNP Detail
Chr15:97986711f 1SNPGG GGGGGGG G GGA             A/G
rs36880496
MPD | dbSNP | MGI SNP Detail
Chr15:97986855f 1SNPTT TTTTTTCTT TCT             C/T
rs31603207
MPD | dbSNP | MGI SNP Detail
Chr15:97987550f 3SNPCC TCTTCCCCC CCCTCT          C/T
rs32416581
MPD | dbSNP | MGI SNP Detail
Chr15:97988510f 2SNPC C   T         C            C/T
rs31914933
MPD | dbSNP | MGI SNP Detail
Chr15:97988636f 2SNPA A   G                      A/G
rs32332654
MPD | dbSNP | MGI SNP Detail
Chr15:97988678f 2SNPT T   C                      C/T
rs32196074
MPD | dbSNP | MGI SNP Detail
Chr15:97988783f 2SNPG G   A                      A/G
rs31647677
MPD | dbSNP | MGI SNP Detail
Chr15:97988888f 2SNPG G   A                      A/G
rs32315131
MPD | dbSNP | MGI SNP Detail
Chr15:97989849f 1SNPG G   G   A     G            A/G
rs31949810
MPD | dbSNP | MGI SNP Detail
Chr15:97990537f 2SNPA     A         GAG          A/G
rs32053174
MPD | dbSNP | MGI SNP Detail
Chr15:97990718f 1SNPA     G                      A/G
rs31830663
MPD | dbSNP | MGI SNP Detail
Chr15:97990759f 2SNPC     T                      C/T
rs32466368
MPD | dbSNP | MGI SNP Detail
Chr15:97992468f 2SNPC C   T         C            C/T
rs32176273
MPD | dbSNP | MGI SNP Detail
Chr15:97993232f 2SNPA A   C   C     A            A/C
rs32161418
MPD | dbSNP | MGI SNP Detail
Chr15:97993271f 3SNPA G   G   G     GAG          A/G
rs32440231
MPD | dbSNP | MGI SNP Detail
Chr15:97993280f 2SNPT T   C   C     T            C/T
rs32264848
MPD | dbSNP | MGI SNP Detail
Chr15:97993437f 2SNPT T   C                      C/T
rs32520323
MPD | dbSNP | MGI SNP Detail
Chr15:97993502f 2SNPC C   T                      C/T
rs31989089
MPD | dbSNP | MGI SNP Detail
Chr15:97993532f 2SNPA A   G                      A/G
rs32279567
MPD | dbSNP | MGI SNP Detail
Chr15:97993546f 2SNPG G   T                      G/T
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs32406070
MPD | dbSNP | MGI SNP Detail
Chr15:97993547f 1SNPC C   T                      C/T
rs46995196
MPD | dbSNP | MGI SNP Detail
Chr15:97994050f 2SNPG     G         AGA          A/G
rs50871053
MPD | dbSNP | MGI SNP Detail
Chr15:97994168f 1SNPA     G         A            A/G
rs49916207
MPD | dbSNP | MGI SNP Detail
Chr15:97994325f 1SNP      G         A            A/G
rs48187097
MPD | dbSNP | MGI SNP Detail
Chr15:97994418f 1SNPT     C         T            C/T
rs47137294
MPD | dbSNP | MGI SNP Detail
Chr15:97994530f 1SNPA     G         A            A/G
rs49362197
MPD | dbSNP | MGI SNP Detail
Chr15:97994553f 1SNPC     T         C            C/T
rs52060725
MPD | dbSNP | MGI SNP Detail
Chr15:97994618f 1SNPC     T                      C/T
rs48198351
MPD | dbSNP | MGI SNP Detail
Chr15:97994794f 1SNPG     A                      A/G
rs47014918
MPD | dbSNP | MGI SNP Detail
Chr15:97994797f 1SNPC     T                      C/T
rs49023802
MPD | dbSNP | MGI SNP Detail
Chr15:97995001f 1SNPT     A                      A/T
rs32355742
MPD | dbSNP | MGI SNP Detail
Chr15:97995176f 2SNPT T   C         T            C/T
rs31922516
MPD | dbSNP | MGI SNP Detail
Chr15:97995291f 2SNPA A   C         A            A/C
rs32149555
MPD | dbSNP | MGI SNP Detail
Chr15:97995302f 1SNPA A   G         A            A/G
rs250170508
MPD | dbSNP | MGI SNP Detail
Chr15:97995647f 1SNP                 CT          C/T
rs31553068
MPD | dbSNP | MGI SNP Detail
Chr15:97996513f 3SNPG     G         AGA          A/G
rs31586864
MPD | dbSNP | MGI SNP Detail
Chr15:97996561f 2SNPA     G         A            A/G
rs31839442
MPD | dbSNP | MGI SNP Detail
Chr15:97996654f 2SNPA     C         A            A/C
rs8259811
MPD | dbSNP | MGI SNP Detail
Chr15:97998793r 4SNPGGGGGAA         GGGGGG  GGGGAA/G
rs32128820
MPD | dbSNP | MGI SNP Detail
Chr15:97998804f 2SNPG G   A         G            A/G
rs8259810
MPD | dbSNP | MGI SNP Detail
Chr15:97998815r 1IN-DEL-G-----            - -  - ----/G
rs8259809
MPD | dbSNP | MGI SNP Detail
Chr15:97998830r 1SNPTCTT T             TTT  T TTTC/T
rs31924818
MPD | dbSNP | MGI SNP Detail
Chr15:97998940f 2SNPC C   T         C            C/T
rs32103750
MPD | dbSNP | MGI SNP Detail
Chr15:97999011f 2SNPA A   G         A            A/G
rs32531505
MPD | dbSNP | MGI SNP Detail
Chr15:97999048f 2SNPA A   G         A            A/G
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs31716707
MPD | dbSNP | MGI SNP Detail
Chr15:97999358f 2SNPA A   G   A     A            A/G
rs31590792
MPD | dbSNP | MGI SNP Detail
Chr15:97999361f 2SNPG G   A   G     G            A/G
rs32272829
MPD | dbSNP | MGI SNP Detail
Chr15:97999514f 3SNPTCTT CC CCT  TT T            C/T
rs32351405
MPD | dbSNP | MGI SNP Detail
Chr15:97999964f 3SNPG A   G   G     AGA          A/G
rs32171293
MPD | dbSNP | MGI SNP Detail
Chr15:98000042f 2SNPG G   A         G            A/G
rs31620038
MPD | dbSNP | MGI SNP Detail
Chr15:98000046f 2SNPC C   T         C            C/T
rs36777615
MPD | dbSNP | MGI SNP Detail
Chr15:98000137f 2SNPAG A  G GGAAAAAAA            A/G
rs31773859
MPD | dbSNP | MGI SNP Detail
Chr15:98000147f 2SNPT T   C         T            C/T
rs6165070
MPD | dbSNP | MGI SNP Detail
Chr15:98000762f 1SNP  G                   T      G/T
rs6165509
MPD | dbSNP | MGI SNP Detail
Chr15:98000813f 1SNP  G                   C      C/G
rs46308227
MPD | dbSNP | MGI SNP Detail
Chr15:98000873f 1SNPG                            G
rs6165631
MPD | dbSNP | MGI SNP Detail
Chr15:98000881f 1SNP  G                   A      A/G
rs6166036
MPD | dbSNP | MGI SNP Detail
Chr15:98000896f 3SNPC C   T         C     T      C/T
rs32536819
MPD | dbSNP | MGI SNP Detail
Chr15:98000964f 2SNPA A   G         A            A/G
rs48178173
MPD | dbSNP | MGI SNP Detail
Chr15:98001454f 2SNPA     A         GAG          A/G
rs37168319
MPD | dbSNP | MGI SNP Detail
Chr15:98001815f 2SNPCT C TT TTCCCCCC             C/T
rs38043902
MPD | dbSNP | MGI SNP Detail
Chr15:98001845f 1SNP C T  C   CTT CC             C/T
rs47949275
MPD | dbSNP | MGI SNP Detail
Chr15:98001951f 1SNP      C                      C
rs46573429
MPD | dbSNP | MGI SNP Detail
Chr15:98001962f 1SNPT     C                      C/T
rs38631947
MPD | dbSNP | MGI SNP Detail
Chr15:98002099f 2SNPG  G TT T G  GGG             G/T
rs36928218
MPD | dbSNP | MGI SNP Detail
Chr15:98002111f 2SNPT  T CC C TTTTTT             C/T
rs224705536
MPD | dbSNP | MGI SNP Detail
Chr15:98002219f 1SNP                 CT          C/T
rs38879991
MPD | dbSNP | MGI SNP Detail
Chr15:98002430f 1SNP G A GG GGGAA GG             A/G
rs3023426
MPD | dbSNP | MGI SNP Detail
Chr15:98003172r 2SNPC  C  T            CC        C/T
rs3023425
MPD | dbSNP | MGI SNP Detail
Chr15:98003378r 3SNPC  C  A            C   C     A/C
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs31991792
MPD | dbSNP | MGI SNP Detail
Chr15:98003482f 3SNPAAAA GG AA    AA             A/G
rs36775281
MPD | dbSNP | MGI SNP Detail
Chr15:98003675f 1SNPTT T TT TT TT CC             C/T
rs32300696
MPD | dbSNP | MGI SNP Detail
Chr15:98003720f 3SNPCTCC TT TTCCCCCCC            C/T
rs36274591
MPD | dbSNP | MGI SNP Detail
Chr15:98003817f 1SNPAG A AA GAAAAAAA             A/G
rs32032115
MPD | dbSNP | MGI SNP Detail
Chr15:98003846f 3SNPTGTT GG GG   TTTT            G/T
rs37601783
MPD | dbSNP | MGI SNP Detail
Chr15:98004145f 1SNPG  GGAA  AAGGGAA             A/G
rs36968235
MPD | dbSNP | MGI SNP Detail
Chr15:98004214f 1SNP C T CC CT T T               C/T
rs37724432
MPD | dbSNP | MGI SNP Detail
Chr15:98004281f 1SNP G G GG GG GGGAA             A/G
rs36914246
MPD | dbSNP | MGI SNP Detail
Chr15:98004429f 1SNPCC C CC CC CCCTT             C/T
rs36428788
MPD | dbSNP | MGI SNP Detail
Chr15:98004536f 1SNP   C CC TC CCC               C/T
rs31563885
MPD | dbSNP | MGI SNP Detail
Chr15:98004655f 2SNPG G   A   A                  A/G
rs31669907
MPD | dbSNP | MGI SNP Detail
Chr15:98004844f 2SNPA A   G   G                  A/G
rs31848919
MPD | dbSNP | MGI SNP Detail
Chr15:98005095f 2SNPG G   A         G            A/G
rs32221250
MPD | dbSNP | MGI SNP Detail
Chr15:98005440f 2SNPG G   A                      A/G
rs36692655
MPD | dbSNP | MGI SNP Detail
Chr15:98005980f 2SNPCG C  T G  CCC  C            C/G/T
rs36513482
MPD | dbSNP | MGI SNP Detail
Chr15:98006098f 1SNPCT CCCC TCCCCCCC             C/T
rs47011100
MPD | dbSNP | MGI SNP Detail
Chr15:98006212f 1SNPG     G         G            G
rs37979086
MPD | dbSNP | MGI SNP Detail
Chr15:98006253f 3SNPCC A CC CC  A  CACA          A/C
rs47264882
MPD | dbSNP | MGI SNP Detail
Chr15:98006259f 2SNPA     G         GAG          A/G
rs36562514
MPD | dbSNP | MGI SNP Detail
Chr15:98006277f 1SNP C T TT CCT TTTT             C/T
rs37178465
MPD | dbSNP | MGI SNP Detail
Chr15:98006394f 1SNP A G GG AG   GGG             A/G
rs52394069
MPD | dbSNP | MGI SNP Detail
Chr15:98006458f 1SNPA     G         A            A/G

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
06/22/2016
MGI 6.04
The Jackson Laboratory