|
Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
|
Symbol Name ID |
Jup junction plakoglobin MGI:96650 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs27072858 MPD | dbSNP | MGI SNP Detail | Chr11:100230533 | f | Jup : Locus-Region | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | C | C/T | |||||
| rs27072857 MPD | dbSNP | MGI SNP Detail | Chr11:100231141 | f | Jup : Locus-Region | 1 | SNP | A | A | A | A | A | A | A | T | A | A | A | A | A | A/T | |||||
| rs6397691 MPD | dbSNP | MGI SNP Detail | Chr11:100231551 | f | Jup : Locus-Region | 1 | SNP | A | C | A/C | ||||||||||||||||
| rs29400064 MPD | dbSNP | MGI SNP Detail | Chr11:100233310 | f | Jup : Intron | 1 | SNP | T | A | T | T | A/T | ||||||||||||||
| rs29408384 MPD | dbSNP | MGI SNP Detail | Chr11:100233504 | f | Jup : Intron | 1 | SNP | C | C | A | C | A/C | ||||||||||||||
| rs29461403 MPD | dbSNP | MGI SNP Detail | Chr11:100233504 | f | Jup : Intron | 1 | SNP | G | G | A | G | A/G | ||||||||||||||
| rs3676321 MPD | dbSNP | MGI SNP Detail | Chr11:100233539 | f | Jup : Intron | 1 | SNP | G | A | A/G | ||||||||||||||||
| rs27072856 MPD | dbSNP | MGI SNP Detail | Chr11:100233926 | f | Jup : Intron | 2 | SNP | G | G | A | G | G | G | G | G | G | G | G | G | G | G | A/G | ||||
| rs29451365 MPD | dbSNP | MGI SNP Detail | Chr11:100234609 | f | Jup : Intron | 1 | SNP | C | T | C | C | C/T | ||||||||||||||
| rs29425306 MPD | dbSNP | MGI SNP Detail | Chr11:100236334 | f | Jup : Intron | 1 | SNP | T | C | C | C/T | |||||||||||||||
| rs27072855 MPD | dbSNP | MGI SNP Detail | Chr11:100236429 | f | Jup : Intron | 1 | SNP | T | T | T | T | T | T | T | C | T | T | T | T | T | C/T | |||||
| rs27072854 MPD | dbSNP | MGI SNP Detail | Chr11:100237860 | f | Jup : Intron | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | C/T | |||||||
| rs27072853 MPD | dbSNP | MGI SNP Detail | Chr11:100237893 | f | Jup : Intron | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | C | C/T | |||||
| rs29442652 MPD | dbSNP | MGI SNP Detail | Chr11:100238635 | f | Jup : Intron | 1 | SNP | T | A | A | A/T | |||||||||||||||
| rs29463888 MPD | dbSNP | MGI SNP Detail | Chr11:100239119 | f | Jup : Intron | 1 | SNP | C | T | T | C/T | |||||||||||||||
| rs27072852 MPD | dbSNP | MGI SNP Detail | Chr11:100239261 | f | Jup : Intron | 1 | SNP | T | T | T | T | T | T | T | C | T | T | T | T | T | C/T | |||||
| rs27072851 MPD | dbSNP | MGI SNP Detail | Chr11:100239289 | f | Jup : Intron | 1 | SNP | T | T | T | T | T | T | T | G | T | T | T | T | T | G/T | |||||
| rs29470110 MPD | dbSNP | MGI SNP Detail | Chr11:100239376 | f | Jup : Intron | 1 | SNP | C | G | C | C | C/G | ||||||||||||||
| rs27072850 MPD | dbSNP | MGI SNP Detail | Chr11:100239565 | f | Jup : Coding-Synonymous | 2 | SNP | G | A | G | G | G | G | G | G | G | G | G | G | G | G | A/G | ||||
| rs27072849 MPD | dbSNP | MGI SNP Detail | Chr11:100239826 | f | Jup : Intron | 1 | SNP | C | C | C | C | T | C | C | C | C | T | C/T | ||||||||
| rs29383949 MPD | dbSNP | MGI SNP Detail | Chr11:100239966 | f | Jup : Intron | 1 | SNP | T | C | T | T | C/T | ||||||||||||||
| rs29388926 MPD | dbSNP | MGI SNP Detail | Chr11:100240339 | f | Jup : Intron | 1 | SNP | T | C | T | T | C/T | ||||||||||||||
| rs6296744 MPD | dbSNP | MGI SNP Detail | Chr11:100240369 | f | Jup : Intron | 2 | SNP | G | G | G | A | G | G | A | G | A | A/G | |||||||||
| rs27072848 MPD | dbSNP | MGI SNP Detail | Chr11:100240848 | f | Jup : Coding-Synonymous | 1 | SNP | T | T | T | T | T | T | T | T | C | T | C/T | ||||||||
| rs29465576 MPD | dbSNP | MGI SNP Detail | Chr11:100241143 | f | Jup : Intron | 1 | SNP | C | G | C | C/G | |||||||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs29394633 MPD | dbSNP | MGI SNP Detail | Chr11:100242674 | f | Jup : Intron | 1 | SNP | C | A | C | A/C | |||||||||||||||
| rs13469626 MPD | dbSNP | MGI SNP Detail | Chr11:100244362 | r | Jup : Coding-Synonymous | 1 | SNP | A | A | C | A/C | |||||||||||||||
| rs29414247 MPD | dbSNP | MGI SNP Detail | Chr11:100246149 | f | Jup : Intron | 1 | SNP | C | T | C | C | C/T | ||||||||||||||
| rs29469320 MPD | dbSNP | MGI SNP Detail | Chr11:100246285 | f | Jup : Intron | 1 | SNP | G | G | C | G | G | C/G | |||||||||||||
| rs29476217 MPD | dbSNP | MGI SNP Detail | Chr11:100247914 | f | Jup : Intron | 1 | SNP | A | G | A | A | A/G | ||||||||||||||
| rs29406543 MPD | dbSNP | MGI SNP Detail | Chr11:100247917 | f | Jup : Intron | 1 | SNP | T | C | T | T | C/T | ||||||||||||||
| rs29418117 MPD | dbSNP | MGI SNP Detail | Chr11:100247923 | f | Jup : Intron | 1 | SNP | A | C | A | A | A/C | ||||||||||||||
| rs29405107 MPD | dbSNP | MGI SNP Detail | Chr11:100247945 | f | Jup : Intron | 1 | SNP | C | T | C | C | C/T | ||||||||||||||
| rs29394073 MPD | dbSNP | MGI SNP Detail | Chr11:100250108 | f | Jup : Intron | 1 | SNP | G | A | G | A/G | |||||||||||||||
| rs29439045 MPD | dbSNP | MGI SNP Detail | Chr11:100250172 | f | Jup : Intron | 1 | SNP | T | C | T | C/T | |||||||||||||||
| rs6368824 MPD | dbSNP | MGI SNP Detail | Chr11:100250628 | f | Jup : Intron | 1 | SNP | C | T | C/T | ||||||||||||||||
| rs6368882 MPD | dbSNP | MGI SNP Detail | Chr11:100250656 | f | Jup : Intron | 1 | SNP | A | G | A/G | ||||||||||||||||
| rs6272953 MPD | dbSNP | MGI SNP Detail | Chr11:100251022 | f | Jup : Intron | 1 | SNP | A | G | A/G | ||||||||||||||||
| rs27072847 MPD | dbSNP | MGI SNP Detail | Chr11:100251769 | f | Jup : Intron | 1 | SNP | G | G | G | A | G | A | G | G | G | A/G | |||||||||
| rs27072846 MPD | dbSNP | MGI SNP Detail | Chr11:100252156 | f | Jup : Intron | 2 | SNP | A | G | A | A | A | A/G | |||||||||||||
| rs29399134 MPD | dbSNP | MGI SNP Detail | Chr11:100252302 | f | Jup : Intron | 1 | SNP | A | A | G | A | A/G | ||||||||||||||
| rs29448777 MPD | dbSNP | MGI SNP Detail | Chr11:100252398 | f | Jup : Intron | 1 | SNP | G | G | A | G | A/G | ||||||||||||||
| rs27072845 MPD | dbSNP | MGI SNP Detail | Chr11:100252416 | f | Jup : Intron | 1 | SNP | T | T | T | G | T | T | G | T | T | T | G | G/T | |||||||
| rs29474646 MPD | dbSNP | MGI SNP Detail | Chr11:100252657 | f | Jup : Intron | 1 | SNP | A | G | A | A | A/G | ||||||||||||||
| rs29402583 MPD | dbSNP | MGI SNP Detail | Chr11:100253208 | f | Jup : Intron | 1 | SNP | A | G | A | A | A/G | ||||||||||||||
| rs29469595 MPD | dbSNP | MGI SNP Detail | Chr11:100253347 | f | Jup : Intron | 1 | SNP | C | T | C | C | C/T | ||||||||||||||
| rs29428357 MPD | dbSNP | MGI SNP Detail | Chr11:100253652 | f | Jup : Intron | 1 | SNP | G | G | A | G | A/G | ||||||||||||||
| rs29468853 MPD | dbSNP | MGI SNP Detail | Chr11:100253695 | f | Jup : Intron | 1 | SNP | A | A | G | A | A/G | ||||||||||||||
| rs29452591 MPD | dbSNP | MGI SNP Detail | Chr11:100253842 | f | Jup : Intron | 1 | SNP | A | A | G | A | A | A/G | |||||||||||||
| rs27072844 MPD | dbSNP | MGI SNP Detail | Chr11:100253910 | f | Jup : Intron | 2 | SNP | C | C | T | C | C | C | C | C | C | C | C | C | C | C | C | C/T | |||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs27072843 MPD | dbSNP | MGI SNP Detail | Chr11:100254018 | f | Jup : Intron | 1 | SNP | C | C | T | C | C | C | C | C | C/T | ||||||||||
| rs27072842 MPD | dbSNP | MGI SNP Detail | Chr11:100254034 | f | Jup : Intron | 2 | SNP | G | G | A | G | G | G | G | A | G | G | G | G | A | A/G | |||||
| rs29394517 MPD | dbSNP | MGI SNP Detail | Chr11:100254092 | f | Jup : Intron | 1 | SNP | A | A | G | A | A | A/G | |||||||||||||
| rs27072841 MPD | dbSNP | MGI SNP Detail | Chr11:100254114 | f | Jup : Intron | 2 | SNP | T | T | C | T | T | T | T | T | C/T | ||||||||||
| rs29420089 MPD | dbSNP | MGI SNP Detail | Chr11:100254240 | f | Jup : Intron | 1 | SNP | C | T | T | C/T | |||||||||||||||
| rs27072840 MPD | dbSNP | MGI SNP Detail | Chr11:100254735 | f | Jup : Intron | 2 | SNP | A | G | A | A | G | A | A | A | A | G | A/G | ||||||||
| rs29386325 MPD | dbSNP | MGI SNP Detail | Chr11:100254914 | f | Jup : Intron | 1 | SNP | G | G | A | G | A/G | ||||||||||||||
| rs27072839 MPD | dbSNP | MGI SNP Detail | Chr11:100255021 | f | Jup : Intron | 2 | SNP | T | T | C | T | T | T | T | C | T | T | T | C/T | |||||||
| rs29444768 MPD | dbSNP | MGI SNP Detail | Chr11:100255278 | f | Jup : Intron | 1 | SNP | C | T | C | C | C/T | ||||||||||||||
| rs27072838 MPD | dbSNP | MGI SNP Detail | Chr11:100255305 | f | Jup : Intron | 2 | SNP | A | A | G | A | A | A | G | A | A | G | A | A | A | A | G | A/G | |||
| rs29407423 MPD | dbSNP | MGI SNP Detail | Chr11:100255415 | f | Jup : Intron | 1 | SNP | A | T | T | A/T | |||||||||||||||
| rs29468529 MPD | dbSNP | MGI SNP Detail | Chr11:100255698 | f | Jup : Intron | 1 | SNP | G | A | A | A/G | |||||||||||||||
| rs29414691 MPD | dbSNP | MGI SNP Detail | Chr11:100256007 | f | Jup : Intron | 1 | SNP | G | T | G | G | G/T | ||||||||||||||
| rs27072837 MPD | dbSNP | MGI SNP Detail | Chr11:100256361 | f | Jup : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | T | C/T | ||||||||
| rs29440245 MPD | dbSNP | MGI SNP Detail | Chr11:100257208 | f | Jup : Intron | 1 | SNP | A | T | A/T | ||||||||||||||||
| rs27072836 MPD | dbSNP | MGI SNP Detail | Chr11:100257412 | f | Jup : Intron | 1 | SNP | C | C | C | C | C | G | C | C | C | G | C/G | ||||||||
| rs27072835 MPD | dbSNP | MGI SNP Detail | Chr11:100258570 | f | Jup : Intron | 2 | SNP | A | A | G | A | A | A | G | A | A | A | A | A | A | G | A/G | ||||
| rs29410868 MPD | dbSNP | MGI SNP Detail | Chr11:100258665 | f | Jup : Intron | 1 | SNP | T | T | C | T | T | C/T | |||||||||||||
| rs29448555 MPD | dbSNP | MGI SNP Detail | Chr11:100258792 | f | Jup : Intron | 1 | SNP | A | G | A | A | A/G | ||||||||||||||
| rs27072834 MPD | dbSNP | MGI SNP Detail | Chr11:100258921 | f | Jup : Intron | 2 | SNP | A | G | A | A | G | A | A | G | A | A | A | A | G | A/G | |||||
| rs29384582 MPD | dbSNP | MGI SNP Detail | Chr11:100259034 | f | Jup : mRNA-UTR | 1 | SNP | A | G | A | A/G |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
||
|
Citing These Resources Funding Information Warranty Disclaimer & Copyright Notice Send questions and comments to User Support. |
last database update 05/08/2013 MGI 5.13 |
|
|
|
||
Analysis Tools