About   Help   FAQ
Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Irf1
interferon regulatory factor 1
MGI:96590

84 matching SNPs displayed
Full result set is also available in a tab-delimited format.


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs13484574
MPD | dbSNP | MGI SNP Detail
Chr11:53768075fHlb290 : within coordinates of
Irf1 : Locus-Region
1SNP CC   C  G     C G            C      C/G
rs248419950
MPD | dbSNP | MGI SNP Detail
Chr11:53768132fHlb290 : within coordinates of
Irf1 : Locus-Region
1SNP                T           A        A/T
rs13495932
MPD | dbSNP | MGI SNP Detail
Chr11:53768494fHlb290 : within coordinates of
Irf1 : Locus-Region
1SNP  T T T  T T     CTT                 C/T
rs13484575
MPD | dbSNP | MGI SNP Detail
Chr11:53768768fHlb290 : within coordinates of
Irf1 : Locus-Region
1SNP  G G G  T G     CGG                 C/G/T
rs13484576
MPD | dbSNP | MGI SNP Detail
Chr11:53768785fHlb290 : within coordinates of
Irf1 : Locus-Region
1SNP  G G G  A G     AGG                 A/G
rs13495933
MPD | dbSNP | MGI SNP Detail
Chr11:53769235fHlb290 : within coordinates of
Irf1 : Locus-Region
1SNP  C C C  C C     TCC                 C/T
rs13484577
MPD | dbSNP | MGI SNP Detail
Chr11:53769281fHlb290 : within coordinates of
Irf1 : Locus-Region
1SNP  A C    T C     CCC                 A/C/T
rs13495934
MPD | dbSNP | MGI SNP Detail
Chr11:53769308fHlb290 : within coordinates of
Irf1 : Locus-Region
1SNP  CCC C  T C     TCC                 C/T
rs13484578
MPD | dbSNP | MGI SNP Detail
Chr11:53769628fHlb290 : within coordinates of
Irf1 : Locus-Region
1SNP  G G G  C G     CGG                 C/G
rs13484579
MPD | dbSNP | MGI SNP Detail
Chr11:53769678fHlb290 : within coordinates of
Irf1 : Locus-Region
1SNP         G       G A                 A/G
rs13495935
MPD | dbSNP | MGI SNP Detail
Chr11:53770000fHlb290 : within coordinates of
Irf1 : Locus-Region
1SNP  C      A       C C                 A/C
rs13484580
MPD | dbSNP | MGI SNP Detail
Chr11:53770199fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Locus-Region
Irf1 : mRNA-UTR
1SNP  T T T  C T     CTT                 C/T
rs13495936
MPD | dbSNP | MGI SNP Detail
Chr11:53770320fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
Irf1 : Locus-Region
1SNP  G G    A G     AGG                 A/G
rs13484581
MPD | dbSNP | MGI SNP Detail
Chr11:53770444fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
Irf1 : Locus-Region
1SNP         G       T                   G/T
rs13495937
MPD | dbSNP | MGI SNP Detail
Chr11:53770765fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP  G G    G       AGG                 A/G
rs13484582
MPD | dbSNP | MGI SNP Detail
Chr11:53770853fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP         A       C A                 A/C
rs13484583
MPD | dbSNP | MGI SNP Detail
Chr11:53771107fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP  T T    G T     GTT                 G/T
rs13495938
MPD | dbSNP | MGI SNP Detail
Chr11:53771351fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Coding-Synonymous
1SNP  C C C  C C     TCC                 C/T
rs13484584
MPD | dbSNP | MGI SNP Detail
Chr11:53771392fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP  G G    G       AGG                 A/G
rs13495939
MPD | dbSNP | MGI SNP Detail
Chr11:53771449fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP  C C C  C C     TCC                 C/T
rs13484585
MPD | dbSNP | MGI SNP Detail
Chr11:53771590fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP    T    C       TTT                 C/T
rs13484586
MPD | dbSNP | MGI SNP Detail
Chr11:53771714fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP  G G G  G G     AGG                 A/G
rs13495940
MPD | dbSNP | MGI SNP Detail
Chr11:53771839fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP  AAA A  G A     GAA                 A/G
rs13484587
MPD | dbSNP | MGI SNP Detail
Chr11:53771966fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP TTTTTTT G T   T GTT          T G    G/T
rs13495941
MPD | dbSNP | MGI SNP Detail
Chr11:53772454fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Gm17334 : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP CCCCCCC C C   C TCC          C C    C/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs13484588
MPD | dbSNP | MGI SNP Detail
Chr11:53772483fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Gm17334 : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP CCCCCCC T C   C CCC          C C    C/T
rs13495942
MPD | dbSNP | MGI SNP Detail
Chr11:53772543fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Gm17334 : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP AA A A  C     A AAA          A      A/C
rs13484589
MPD | dbSNP | MGI SNP Detail
Chr11:53772589fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Gm17334 : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP TT T T  T     T CTT          T T    C/T
rs13484590
MPD | dbSNP | MGI SNP Detail
Chr11:53773397fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP AAA  A  G     A AA             A    A/G
rs13495943
MPD | dbSNP | MGI SNP Detail
Chr11:53773507fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP GGGGGGG G G   G AGG          G G    A/G
rs13484591
MPD | dbSNP | MGI SNP Detail
Chr11:53773530fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP TTTTTTT C     T TTT          T T    C/T
rs13495944
MPD | dbSNP | MGI SNP Detail
Chr11:53773672fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Coding-Synonymous
1SNP AAAAAAA G     A GAA          A G    A/G
rs13484592
MPD | dbSNP | MGI SNP Detail
Chr11:53773986fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP CCC  C  T     C CCC          C C    C/T
rs13481028
MPD | dbSNP | MGI SNP Detail
Chr11:53774021fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
4SNPAAAAA AAAAAGAAG A   AGAAAAAAGA  A AGGA/G
rs13484593
MPD | dbSNP | MGI SNP Detail
Chr11:53774056fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP T  T T  T     T CTT          T T    C/T
rs13495945
MPD | dbSNP | MGI SNP Detail
Chr11:53774088fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Coding-Synonymous
1SNP TTTTTTT T T   T CTT          T T    C/T
rs13484594
MPD | dbSNP | MGI SNP Detail
Chr11:53774358fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Coding-NonSynonymous
1SNP GGGGGGG G G   G CGG          G G    C/G
rs13495946
MPD | dbSNP | MGI SNP Detail
Chr11:53775047fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP CC CCCC C     C GCC          C C    C/G
rs13484595
MPD | dbSNP | MGI SNP Detail
Chr11:53775130fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP GGGGGGG G G   G AGG          G G    A/G
rs13495947
MPD | dbSNP | MGI SNP Detail
Chr11:53775200fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP AAAAAAA A A   A GAA          A A    A/G
rs13484596
MPD | dbSNP | MGI SNP Detail
Chr11:53775298fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP TTTTTTT C     T CTT          T C    C/T
rs13484597
MPD | dbSNP | MGI SNP Detail
Chr11:53775495fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP T TT TT C     T TTT          T T    C/T
rs13495948
MPD | dbSNP | MGI SNP Detail
Chr11:53775527fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP AAAAAAA T A   A AAA          A A    A/T
rs13484598
MPD | dbSNP | MGI SNP Detail
Chr11:53775562fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP CCCCCCC C C   C TCC          C C    C/T
rs46366940
MPD | dbSNP | MGI SNP Detail
Chr11:53775686fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP  T        T                   C     C/T
rs13495949
MPD | dbSNP | MGI SNP Detail
Chr11:53775801fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
2SNP GGGGGGG G G   GGGGA        A G G    A/G
rs13484599
MPD | dbSNP | MGI SNP Detail
Chr11:53775820fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP GGGGGGG G G   G GGG          G T    G/T
rs13484600
MPD | dbSNP | MGI SNP Detail
Chr11:53775822fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP TTTTTTT G T   T TTT          T      G/T
rs49452041
MPD | dbSNP | MGI SNP Detail
Chr11:53775883fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP GG        G                   A     A/G
rs13495950
MPD | dbSNP | MGI SNP Detail
Chr11:53776045fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Coding-NonSynonymous
1SNP GGGGGGG G G   G AGG          G G    A/G
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs13484601
MPD | dbSNP | MGI SNP Detail
Chr11:53776185fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP CCCCCCC T C   C  CC          C C    C/T
rs13495951
MPD | dbSNP | MGI SNP Detail
Chr11:53776259fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
1SNP GGGG GG G G   G  GG          G T    G/T
rs13484602
MPD | dbSNP | MGI SNP Detail
Chr11:53776733fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
Irf1 : mRNA-UTR
1SNP TTTTTTT T T   T CTT          T T    C/T
rs13484603
MPD | dbSNP | MGI SNP Detail
Chr11:53776749fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
Irf1 : mRNA-UTR
1SNP AAAAAAA T A   A  AA          A T    A/T
rs13495952
MPD | dbSNP | MGI SNP Detail
Chr11:53776987fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
Irf1 : mRNA-UTR
1SNP AAAAAAA A A   A TAA          A A    A/T
rs13484604
MPD | dbSNP | MGI SNP Detail
Chr11:53777097fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
Irf1 : mRNA-UTR
1SNP GGGGGGG G G   G TGG          G G    G/T
rs253362174
MPD | dbSNP | MGI SNP Detail
Chr11:53777655fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Intron
Irf1 : mRNA-UTR
1SNP                T           G        G/T
rs13495953
MPD | dbSNP | MGI SNP Detail
Chr11:53777943fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : mRNA-UTR
1SNP CCCCCCC C     C TCC          C      C/T
rs13484605
MPD | dbSNP | MGI SNP Detail
Chr11:53777950fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : mRNA-UTR
1SNP TTTTTTT T T   T TTT          T C    C/T
rs13495954
MPD | dbSNP | MGI SNP Detail
Chr11:53777985fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : mRNA-UTR
1SNP TTTTTTT T T   T ATT          T T    A/T
rs13484606
MPD | dbSNP | MGI SNP Detail
Chr11:53778058fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : mRNA-UTR
1SNP CCCC C  C     C TCC          C C    C/T
rs13484607
MPD | dbSNP | MGI SNP Detail
Chr11:53778185fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : mRNA-UTR
1SNP GGGGGGG G G   G AGG          G G    A/G
rs13495955
MPD | dbSNP | MGI SNP Detail
Chr11:53778312fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : mRNA-UTR
1SNP TTTTTTT T T   T ATT          T T    A/T
rs13484608
MPD | dbSNP | MGI SNP Detail
Chr11:53778325fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : mRNA-UTR
1SNP CCCCCCC C C   C TCC          C C    C/T
rs13495956
MPD | dbSNP | MGI SNP Detail
Chr11:53778740fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Locus-Region
2SNPCCCCCCCC C C  CC  CC          C ?T   C/T
rs13484609
MPD | dbSNP | MGI SNP Detail
Chr11:53778750fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : Locus-Region
1SNP GGGGGGG T G   G  GG          G G    G/T
rs220788012
MPD | dbSNP | MGI SNP Detail
Chr11:53778940fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 566 bp downstream of
1SNP                A           T        A/T
rs13484610
MPD | dbSNP | MGI SNP Detail
Chr11:53779178fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 804 bp downstream of
1SNP GGGGGGG A G   G GGG          G G    A/G
rs13495957
MPD | dbSNP | MGI SNP Detail
Chr11:53779186fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 812 bp downstream of
1SNP CCCCCCC C C   C TCC          C C    C/T
rs13484611
MPD | dbSNP | MGI SNP Detail
Chr11:53779230fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 856 bp downstream of
1SNP TTTTTTT T T   T CTT          T T    C/T
rs13495958
MPD | dbSNP | MGI SNP Detail
Chr11:53779331fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 957 bp downstream of
1SNP CCCCCCC T C   C CCC          C C    C/T
rs13484612
MPD | dbSNP | MGI SNP Detail
Chr11:53779353fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 979 bp downstream of
1SNP CCCCCCC C C   C CCC          C T    C/T
rs13502624
MPD | dbSNP | MGI SNP Detail
Chr11:53779477fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 1103 bp downstream of
2SNPAAAAAAAA G A   A AAA          A GG   A/G
rs13484613
MPD | dbSNP | MGI SNP Detail
Chr11:53779487fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 1113 bp downstream of
1SNP TTTTTTT T T   T GTT          T T    G/T
rs13484614
MPD | dbSNP | MGI SNP Detail
Chr11:53779542fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 1168 bp downstream of
2SNP TTTTTTT C T   T  T           T  C   C/T
SNP ID
(dbSNP Build 137)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs13495959
MPD | dbSNP | MGI SNP Detail
Chr11:53779598fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 1224 bp downstream of
1SNP TTTTTTT C T   T  T           T T    C/T
rs13484615
MPD | dbSNP | MGI SNP Detail
Chr11:53779680fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 1306 bp downstream of
1SNP AAAAAAA A A   A GA           A A    A/G
rs13495960
MPD | dbSNP | MGI SNP Detail
Chr11:53779709fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 1335 bp downstream of
1SNP CCCCCCC T C   C TC           C C    C/T
rs26969020
MPD | dbSNP | MGI SNP Detail
Chr11:53779710fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 1336 bp downstream of
1SNPT T T                           TG   G/T
rs13484616
MPD | dbSNP | MGI SNP Detail
Chr11:53779738fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 1364 bp downstream of
1SNP GGGGGGG A G   G GG           G G    A/G
rs13484617
MPD | dbSNP | MGI SNP Detail
Chr11:53779976fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 1602 bp downstream of
1SNP AAAAAAA A A   A GA           A A    A/G
rs13495961
MPD | dbSNP | MGI SNP Detail
Chr11:53780017fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 1643 bp downstream of
1SNP GGGGGGG G G   G AGG          G G    A/G
rs13484618
MPD | dbSNP | MGI SNP Detail
Chr11:53780079fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 1705 bp downstream of
1SNP AAAAAAA A     A GA           A A    A/G
rs13495962
MPD | dbSNP | MGI SNP Detail
Chr11:53780369fDel(11Irf1-D11Mit23)1Rub : within coordinates of
Hlb290 : within coordinates of
Irf1 : 1995 bp downstream of
1SNP  CC  C  C     C TC             C    C/T

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
07/15/2014
MGI 5.18
The Jackson Laboratory