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Genome
Coordinate Discrepancy The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details). |
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Symbol Name ID |
Irf1 interferon regulatory factor 1 MGI:96590 |
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) |  | Gene : dbSNP Function Class | Assays (ss) | Variation Type |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Allele Summary (all strains) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs13495932 MPD | dbSNP | MGI SNP Detail | Chr11:53581996 | f | Irf1 : Locus-Region | 1 | SNP | T | T | T | T | T | C | T | T | C/T | ||||||||||||||||||||||||||
| rs13484575 MPD | dbSNP | MGI SNP Detail | Chr11:53582270 | f | Irf1 : Locus-Region | 1 | SNP | G | G | G | T | G | C | G | G | C/G/T | ||||||||||||||||||||||||||
| rs13484576 MPD | dbSNP | MGI SNP Detail | Chr11:53582287 | f | Irf1 : Locus-Region | 1 | SNP | G | G | G | A | G | A | G | G | A/G | ||||||||||||||||||||||||||
| rs13495933 MPD | dbSNP | MGI SNP Detail | Chr11:53582737 | f | Irf1 : Locus-Region | 1 | SNP | C | C | C | C | C | T | C | C | C/T | ||||||||||||||||||||||||||
| rs13484577 MPD | dbSNP | MGI SNP Detail | Chr11:53582783 | f | Irf1 : Locus-Region | 1 | SNP | C | T | C | C | C | C | C/T | ||||||||||||||||||||||||||||
| rs13495934 MPD | dbSNP | MGI SNP Detail | Chr11:53582810 | f | Irf1 : Locus-Region | 1 | SNP | C | C | C | C | T | C | T | C | C | C/T | |||||||||||||||||||||||||
| rs13484578 MPD | dbSNP | MGI SNP Detail | Chr11:53583130 | f | Irf1 : Locus-Region | 1 | SNP | G | G | G | C | G | C | G | G | C/G | ||||||||||||||||||||||||||
| rs13484579 MPD | dbSNP | MGI SNP Detail | Chr11:53583180 | f | Irf1 : Locus-Region | 1 | SNP | G | G | A | A/G | |||||||||||||||||||||||||||||||
| rs13495935 MPD | dbSNP | MGI SNP Detail | Chr11:53583502 | f | Irf1 : Locus-Region | 1 | SNP | C | A | C | C | A/C | ||||||||||||||||||||||||||||||
| rs13484580 MPD | dbSNP | MGI SNP Detail | Chr11:53583701 | f | Irf1 : mRNA-UTR | 1 | SNP | T | T | T | C | T | C | T | T | C/T | ||||||||||||||||||||||||||
| rs13495936 MPD | dbSNP | MGI SNP Detail | Chr11:53583822 | f | Irf1 : Intron | 1 | SNP | G | G | A | G | A | G | G | A/G | |||||||||||||||||||||||||||
| rs13484581 MPD | dbSNP | MGI SNP Detail | Chr11:53583946 | f | Irf1 : Intron | 1 | SNP | G | T | G/T | ||||||||||||||||||||||||||||||||
| rs13495937 MPD | dbSNP | MGI SNP Detail | Chr11:53584267 | f | Irf1 : Intron | 1 | SNP | G | G | G | A | G | G | A/G | ||||||||||||||||||||||||||||
| rs13484582 MPD | dbSNP | MGI SNP Detail | Chr11:53584355 | f | Irf1 : Intron | 1 | SNP | A | C | A | A/C | |||||||||||||||||||||||||||||||
| rs13484583 MPD | dbSNP | MGI SNP Detail | Chr11:53584609 | f | Irf1 : Intron | 1 | SNP | T | T | G | T | G | T | T | G/T | |||||||||||||||||||||||||||
| rs13495938 MPD | dbSNP | MGI SNP Detail | Chr11:53584853 | f | Irf1 : Coding-Synonymous | 1 | SNP | C | C | C | C | C | T | C | C | C/T | ||||||||||||||||||||||||||
| rs13484584 MPD | dbSNP | MGI SNP Detail | Chr11:53584894 | f | Irf1 : Intron | 1 | SNP | G | G | G | A | G | G | A/G | ||||||||||||||||||||||||||||
| rs13495939 MPD | dbSNP | MGI SNP Detail | Chr11:53584951 | f | Irf1 : Intron | 1 | SNP | C | C | C | C | C | T | C | C | C/T | ||||||||||||||||||||||||||
| rs13484585 MPD | dbSNP | MGI SNP Detail | Chr11:53585092 | f | Irf1 : Intron | 1 | SNP | T | C | T | T | T | C/T | |||||||||||||||||||||||||||||
| rs13484586 MPD | dbSNP | MGI SNP Detail | Chr11:53585216 | f | Irf1 : Intron | 1 | SNP | G | G | G | G | G | A | G | G | A/G | ||||||||||||||||||||||||||
| rs13495940 MPD | dbSNP | MGI SNP Detail | Chr11:53585341 | f | Irf1 : Intron | 1 | SNP | A | A | A | A | G | A | G | A | A | A/G | |||||||||||||||||||||||||
| rs13484587 MPD | dbSNP | MGI SNP Detail | Chr11:53585468 | f | Irf1 : Intron | 1 | SNP | T | T | T | T | T | T | T | G | T | T | G | T | T | T | G | G/T | |||||||||||||||||||
| rs13495941 MPD | dbSNP | MGI SNP Detail | Chr11:53585956 | f | Irf1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C/T | |||||||||||||||||||
| rs13484588 MPD | dbSNP | MGI SNP Detail | Chr11:53585985 | f | Irf1 : Intron | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C/T | |||||||||||||||||||
| rs13495942 MPD | dbSNP | MGI SNP Detail | Chr11:53586045 | f | Irf1 : Intron | 1 | SNP | A | A | A | A | C | A | A | A | A | A | A/C | ||||||||||||||||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs13484589 MPD | dbSNP | MGI SNP Detail | Chr11:53586091 | f | Irf1 : Intron | 1 | SNP | T | T | T | T | T | T | C | T | T | T | T | C/T | |||||||||||||||||||||||
| rs13484590 MPD | dbSNP | MGI SNP Detail | Chr11:53586899 | f | Irf1 : Intron | 1 | SNP | A | A | A | A | G | A | A | A | A | A/G | |||||||||||||||||||||||||
| rs13495943 MPD | dbSNP | MGI SNP Detail | Chr11:53587009 | f | Irf1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | A/G | |||||||||||||||||||
| rs13484591 MPD | dbSNP | MGI SNP Detail | Chr11:53587032 | f | Irf1 : Intron | 1 | SNP | T | T | T | T | T | T | T | C | T | T | T | T | T | T | C/T | ||||||||||||||||||||
| rs13495944 MPD | dbSNP | MGI SNP Detail | Chr11:53587174 | f | Irf1 : Coding-Synonymous | 1 | SNP | A | A | A | A | A | A | A | G | A | G | A | A | A | G | A/G | ||||||||||||||||||||
| rs13484592 MPD | dbSNP | MGI SNP Detail | Chr11:53587488 | f | Irf1 : Intron | 1 | SNP | C | C | C | C | T | C | C | C | C | C | C | C/T | |||||||||||||||||||||||
| rs13481028 MPD | dbSNP | MGI SNP Detail | Chr11:53587523 | f | Irf1 : Intron | 2 | SNP | A | A | A | A | A | A | A | A | A | A | G | A | A | G | A | A | G | A | A | A | A | A | A | A | A | A | G | G | A/G | ||||||
| rs13484593 MPD | dbSNP | MGI SNP Detail | Chr11:53587558 | f | Irf1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | T | T | C/T | ||||||||||||||||||||||||
| rs13495945 MPD | dbSNP | MGI SNP Detail | Chr11:53587590 | f | Irf1 : Coding-Synonymous | 1 | SNP | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | C/T | |||||||||||||||||||
| rs13484594 MPD | dbSNP | MGI SNP Detail | Chr11:53587860 | f | Irf1 : Coding-NonSynonymous | 1 | SNP | G | G | G | G | G | G | G | G | G | G | C | G | G | G | G | C/G | |||||||||||||||||||
| rs13495946 MPD | dbSNP | MGI SNP Detail | Chr11:53588549 | f | Irf1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | G | C | C | C | C | C/G | |||||||||||||||||||||
| rs13484595 MPD | dbSNP | MGI SNP Detail | Chr11:53588632 | f | Irf1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | A/G | |||||||||||||||||||
| rs13495947 MPD | dbSNP | MGI SNP Detail | Chr11:53588702 | f | Irf1 : Intron | 1 | SNP | A | A | A | A | A | A | A | A | A | A | G | A | A | A | A | A/G | |||||||||||||||||||
| rs13484596 MPD | dbSNP | MGI SNP Detail | Chr11:53588800 | f | Irf1 : Intron | 1 | SNP | T | T | T | T | T | T | T | C | T | C | T | T | T | C | C/T | ||||||||||||||||||||
| rs13484597 MPD | dbSNP | MGI SNP Detail | Chr11:53588997 | f | Irf1 : Intron | 1 | SNP | T | T | T | T | T | C | T | T | T | T | T | T | C/T | ||||||||||||||||||||||
| rs13495948 MPD | dbSNP | MGI SNP Detail | Chr11:53589029 | f | Irf1 : Intron | 1 | SNP | A | A | A | A | A | A | A | T | A | A | A | A | A | A | A | A/T | |||||||||||||||||||
| rs13484598 MPD | dbSNP | MGI SNP Detail | Chr11:53589064 | f | Irf1 : Intron | 1 | SNP | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C/T | |||||||||||||||||||
| rs13495949 MPD | dbSNP | MGI SNP Detail | Chr11:53589303 | f | Irf1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | A/G | |||||||||||||||||||
| rs13484599 MPD | dbSNP | MGI SNP Detail | Chr11:53589322 | f | Irf1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | T | G/T | |||||||||||||||||||
| rs13484600 MPD | dbSNP | MGI SNP Detail | Chr11:53589324 | f | Irf1 : Intron | 1 | SNP | T | T | T | T | T | T | T | G | T | T | T | T | T | T | G/T | ||||||||||||||||||||
| rs13495950 MPD | dbSNP | MGI SNP Detail | Chr11:53589547 | f | Irf1 : Coding-NonSynonymous | 1 | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | A/G | |||||||||||||||||||
| rs13484601 MPD | dbSNP | MGI SNP Detail | Chr11:53589687 | f | Irf1 : Intron | 1 | SNP | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C/T | ||||||||||||||||||||
| rs13495951 MPD | dbSNP | MGI SNP Detail | Chr11:53589761 | f | Irf1 : Intron | 1 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | T | G/T | |||||||||||||||||||||
| rs13484602 MPD | dbSNP | MGI SNP Detail | Chr11:53590235 | f | Irf1 : mRNA-UTR | 1 | SNP | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T | C/T | |||||||||||||||||||
| rs13484603 MPD | dbSNP | MGI SNP Detail | Chr11:53590251 | f | Irf1 : mRNA-UTR | 1 | SNP | A | A | A | A | A | A | A | T | A | A | A | A | A | T | A/T | ||||||||||||||||||||
| SNP ID (dbSNP Build 128) | Map Position (NCBI Build 37) | | Gene : dbSNP Function Class | Assays (ss) | Variation Type | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Allele Summary (all strains) |
| rs13495952 MPD | dbSNP | MGI SNP Detail | Chr11:53590489 | f | Irf1 : mRNA-UTR | 1 | SNP | A | A | A | A | A | A | A | A | A | A | T | A | A | A | A | A/T | |||||||||||||||||||
| rs13484604 MPD | dbSNP | MGI SNP Detail | Chr11:53590599 | f | Irf1 : mRNA-UTR | 1 | SNP | G | G | G | G | G | G | G | G | G | G | T | G | G | G | G | G/T |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc |
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last database update 05/22/2013 MGI 5.13 |
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