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Mouse SNPs
Query Results -- Summary
 Symbol
Name
ID
Htr5a
5-hydroxytryptamine (serotonin) receptor 5A
MGI:96283

160 matching SNPs displayed
Full result set is also available in a tab-delimited format.
Include SNPs that map to multiple locations

Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs32111037
MPD | dbSNP | MGI SNP Detail
Chr5:27840247f 3SNPCC    TTTC  CCCCCCCTT                             C/T
rs32111034
MPD | dbSNP | MGI SNP Detail
Chr5:27840303f 3SNPTA    A ATA TTTTTATAA                             A/T
rs32110291
MPD | dbSNP | MGI SNP Detail
Chr5:27840315f 3SNPAA    GGGAA AAAAAAAGG                             A/G
rs52450026
MPD | dbSNP | MGI SNP Detail
Chr5:27840519f 2SNPA       T          TT                             A/T
rs50173076
MPD | dbSNP | MGI SNP Detail
Chr5:27840578f 2SNPA       G          GG                             A/G
rs51644350
MPD | dbSNP | MGI SNP Detail
Chr5:27840938f 2SNPT       G         TGG                             G/T
rs108423199
MPD | dbSNP | MGI SNP Detail
Chr5:27841180f 2SNPA       G          GG                             A/G
rs47378801
MPD | dbSNP | MGI SNP Detail
Chr5:27841247f 2SNPC       G         CGG                             C/G
rs51551881
MPD | dbSNP | MGI SNP Detail
Chr5:27841274f 2SNP        C         ACC                             A/C
rs32110288
MPD | dbSNP | MGI SNP Detail
Chr5:27841389f 3SNPCC  T TTTCCCCCCCCCCTT                             C/T
rs32110285
MPD | dbSNP | MGI SNP Detail
Chr5:27841425f 2SNPAA    GGGAGGAAAAAA GG                             A/G
rs264252599
MPD | dbSNP | MGI SNP Detail
Chr5:27841439f 1SNP                   TT                             T
rs32109422
MPD | dbSNP | MGI SNP Detail
Chr5:27841458f 3SNPTA    AAATAATTTTT TAA                             A/T
rs108836262
MPD | dbSNP | MGI SNP Detail
Chr5:27841460f 2SNPC       T         CTT                             C/T
rs32109419
MPD | dbSNP | MGI SNP Detail
Chr5:27841564f 3SNPCC  A AAACCCCCCCCCCAA                             A/C
rs46494520
MPD | dbSNP | MGI SNP Detail
Chr5:27841584f 2SNPT       C         TCC                             C/T
rs47127279
MPD | dbSNP | MGI SNP Detail
Chr5:27841585f 2SNPC       T         CTT                             C/T
rs32109416
MPD | dbSNP | MGI SNP Detail
Chr5:27841633f 3SNPGG  C CCCGGGGGGGGG CC                             C/G
rs32108703
MPD | dbSNP | MGI SNP Detail
Chr5:27841660f 3SNPCC    TTTCCCCCCCCC TT                             C/T
rs32108700
MPD | dbSNP | MGI SNP Detail
Chr5:27841688f 1SNPTT       TCCTTTTTT                                C/T
rs32108697
MPD | dbSNP | MGI SNP Detail
Chr5:27841865f 3SNPAG  G GGGAGGAAAAA AGG                             A/G
rs32108694
MPD | dbSNP | MGI SNP Detail
Chr5:27841952f 2SNPAG  G GGGAGGAAAAAG GG                             A/G
rs32107831
MPD | dbSNP | MGI SNP Detail
Chr5:27842119f 2SNPTT       TC TTTTTT CC                             C/T
rs32107828
MPD | dbSNP | MGI SNP Detail
Chr5:27842262f 3SNPCT    TTTCT CCCCC CTT                             C/T
rs4225110
MPD | dbSNP | MGI SNP Detail
Chr5:27843177f 2SNPCCCCCCCCCCC CCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCTC/T
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs4225111
MPD | dbSNP | MGI SNP Detail
Chr5:27843213f 1SNPAAA A  AA            GA                           A/G
rs4225112
MPD | dbSNP | MGI SNP Detail
Chr5:27843251f 2SNPCGC C CCCCCCCCCCCC   CC                           C/G
rs4225113
MPD | dbSNP | MGI SNP Detail
Chr5:27843253f 1SNPCTC C  CC            CC                           C/T
rs32107824
MPD | dbSNP | MGI SNP Detail
Chr5:27843270f 1SNPGG  G GGGGA GGGGGG                                A/G
rs6278230
MPD | dbSNP | MGI SNP Detail
Chr5:27843323f 1SNP  G                           T                   G/T
rs29525644
MPD | dbSNP | MGI SNP Detail
Chr5:27843622f 2SNPA       G          GG                             A/G
rs32107131
MPD | dbSNP | MGI SNP Detail
Chr5:27843840f 4SNPG G    AAG  GG  G  AA                             A/G
rs29537618
MPD | dbSNP | MGI SNP Detail
Chr5:27844436f 3SNPG G     A         GAA                             A/G
rs32107128
MPD | dbSNP | MGI SNP Detail
Chr5:27844438f 1SNPGA       GAAGGGGGA                                A/G
rs32107125
MPD | dbSNP | MGI SNP Detail
Chr5:27844499f 1SNPGG     G GAAGG  G                                 A/G
rs32114281
MPD | dbSNP | MGI SNP Detail
Chr5:27844580f 4SNPG G    CCGC GGGGG GCC                             C/G
rs32114278
MPD | dbSNP | MGI SNP Detail
Chr5:27844631f 1SNPAG    AAAAAAAAAAAG                                A/G
rs32114275
MPD | dbSNP | MGI SNP Detail
Chr5:27844672f 1SNPGG  G GG GCCGGGGGG                                C/G
rs32113402
MPD | dbSNP | MGI SNP Detail
Chr5:27844758f 1SNPTT  T  TTTCCTTTTTT                                C/T
rs247393627
MPD | dbSNP | MGI SNP Detail
Chr5:27844813f 1SNP                   TT                             T
rs4135670
MPD | dbSNP | MGI SNP Detail
Chr5:27844821f 2SNPT T     T   G     G                               G/T
rs4136235
MPD | dbSNP | MGI SNP Detail
Chr5:27844876f 1SNP  C         T                                     C/T
rs107865209
MPD | dbSNP | MGI SNP Detail
Chr5:27845044f 2SNPC       G         CGG                             C/G
rs29563932
MPD | dbSNP | MGI SNP Detail
Chr5:27845045f 3SNPA A     G         AGG                             A/G
rs33247107
MPD | dbSNP | MGI SNP Detail
Chr5:27845164f 2SNPG G     T          TT                             G/T
rs33555486
MPD | dbSNP | MGI SNP Detail
Chr5:27845333f 2SNPG G     T         GTT                             G/T
rs29823888
MPD | dbSNP | MGI SNP Detail
Chr5:27845689f 3SNPT T     C         TCC                             C/T
rs32113399
MPD | dbSNP | MGI SNP Detail
Chr5:27845968f 1SNPGA    GGGGGGGGGGG                                 A/G
rs32113396
MPD | dbSNP | MGI SNP Detail
Chr5:27846100f 4SNPTCT   CCCTCCTTTTTCTCC                             C/T
rs32112583
MPD | dbSNP | MGI SNP Detail
Chr5:27846202f 1SNPAA    AAAAGGAAAAAA                                A/G
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs32112580
MPD | dbSNP | MGI SNP Detail
Chr5:27846227f 1SNPCC    CCCCT CCCCCC                                C/T
rs32112577
MPD | dbSNP | MGI SNP Detail
Chr5:27846252f 1SNPTT      TTCCTTTTTT                                C/T
rs32112574
MPD | dbSNP | MGI SNP Detail
Chr5:27846346f 1SNPCC       CT CCCCCC                                C/T
rs29682715
MPD | dbSNP | MGI SNP Detail
Chr5:27846353f 3SNPA A     C         ACC                             A/C
rs33451963
MPD | dbSNP | MGI SNP Detail
Chr5:27846354f 3SNPG G     A         GAA                             A/G
rs32111721
MPD | dbSNP | MGI SNP Detail
Chr5:27846576f 1SNPCC    CCCCC CCCCCG                                C/G
rs32111718
MPD | dbSNP | MGI SNP Detail
Chr5:27846830f 2SNPCC    TT CTTCCCCCC TT                             C/T
rs32111715
MPD | dbSNP | MGI SNP Detail
Chr5:27846874f 1SNPCC    CCCCTTCCCCC                                 C/T
rs32110962
MPD | dbSNP | MGI SNP Detail
Chr5:27846970f 1SNPGA    GGGGGGGGGGG                                 A/G
rs32110959
MPD | dbSNP | MGI SNP Detail
Chr5:27846997f 1SNPGG     G GAAGG GG                                 A/G
rs219193696
MPD | dbSNP | MGI SNP Detail
Chr5:27847265f 1SNP                   AA                             A
rs32110956
MPD | dbSNP | MGI SNP Detail
Chr5:27847308f 1SNPGG    GGGGAAGGGGGG                                A/G
rs32110243
MPD | dbSNP | MGI SNP Detail
Chr5:27847340f 2SNPCC     T C  CCCCC  TT                             C/T
rs32110240
MPD | dbSNP | MGI SNP Detail
Chr5:27847347f 1SNPAA       AG AAAAAA                                A/G
rs246046157
MPD | dbSNP | MGI SNP Detail
Chr5:27847370f 1SNP                   TT                             T
rs213845966
MPD | dbSNP | MGI SNP Detail
Chr5:27847384f 1SNP                   TT                             T
rs32110237
MPD | dbSNP | MGI SNP Detail
Chr5:27847389f 2SNPTC     C TCCTTTTTC CC                             C/T
rs260808623
MPD | dbSNP | MGI SNP Detail
Chr5:27847537f 1SNP                   TT                             T
rs32110234
MPD | dbSNP | MGI SNP Detail
Chr5:27847557f 2SNPTT       TGGTT TT  GG                             G/T
rs32109441
MPD | dbSNP | MGI SNP Detail
Chr5:27847645f 1SNPCC     C CAACC CC                                 A/C
rs32109438
MPD | dbSNP | MGI SNP Detail
Chr5:27847684f 1SNPCA    CCCCAACCCCC                                 A/C
rs33757154
MPD | dbSNP | MGI SNP Detail
Chr5:27847842f 3SNPC C     A          AA                             A/C
rs29550702
MPD | dbSNP | MGI SNP Detail
Chr5:27847926f 3SNPT T     C          CC                             C/T
rs33472380
MPD | dbSNP | MGI SNP Detail
Chr5:27848215f 3SNPG G     T         GTT                             G/T
rs52514199
MPD | dbSNP | MGI SNP Detail
Chr5:27848311f 1SNP        T         G                               G/T
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs32109435
MPD | dbSNP | MGI SNP Detail
Chr5:27848797f 1SNPGA    GGGGGGGGGGG                                 A/G
rs32108692
MPD | dbSNP | MGI SNP Detail
Chr5:27848954f 1SNPGG    GGGGAAGGGGGG                                A/G
rs32108689
MPD | dbSNP | MGI SNP Detail
Chr5:27849231f 1SNPGG  C C CGGGGGGGG                                 C/G
rs52034781
MPD | dbSNP | MGI SNP Detail
Chr5:27849389f 2SNPG       C         GCC                             C/G
rs32108686
MPD | dbSNP | MGI SNP Detail
Chr5:27849416f 1SNPGG    GGGGAAGG GGG                                A/G
rs32107873
MPD | dbSNP | MGI SNP Detail
Chr5:27849443f 1SNPCC    CCCCGGCCCCCC                                C/G
rs47296987
MPD | dbSNP | MGI SNP Detail
Chr5:27849721f 2SNPC       T         CTT                             C/T
rs48484290
MPD | dbSNP | MGI SNP Detail
Chr5:27849979f 2SNP        A          AA                             A
rs47315469
MPD | dbSNP | MGI SNP Detail
Chr5:27850004f 2SNP        T          TT                             T
rs51450549
MPD | dbSNP | MGI SNP Detail
Chr5:27850089f 2SNP        C         TCC                             C/T
rs45729746
MPD | dbSNP | MGI SNP Detail
Chr5:27850101f 2SNP        C         ACC                             A/C
rs48511064
MPD | dbSNP | MGI SNP Detail
Chr5:27850136f 2SNP        G         CGG                             C/G
rs49967593
MPD | dbSNP | MGI SNP Detail
Chr5:27850258f 2SNP        G          GG                             G
rs52315903
MPD | dbSNP | MGI SNP Detail
Chr5:27850303f 2SNP        C         TCC                             C/T
rs52417428
MPD | dbSNP | MGI SNP Detail
Chr5:27850325f 2SNP        T         CTT                             C/T
rs32107870
MPD | dbSNP | MGI SNP Detail
Chr5:27850462f 1SNPTC       TCCTTTTT                                 C/T
rs213695099
MPD | dbSNP | MGI SNP Detail
Chr5:27850465f 1SNP                   TC                             C/T
rs32107867
MPD | dbSNP | MGI SNP Detail
Chr5:27850499f 1SNPCT     C CTTC   C                                 C/T
rs32107864
MPD | dbSNP | MGI SNP Detail
Chr5:27850541f 1SNPTC    TTTTTTTTTTT                                 C/T
rs32107102
MPD | dbSNP | MGI SNP Detail
Chr5:27850619f 3SNPGG    AAAGGGGGGGGGGAA                             A/G
rs48566743
MPD | dbSNP | MGI SNP Detail
Chr5:27850695f 2SNP        T         CTT                             C/T
rs46401030
MPD | dbSNP | MGI SNP Detail
Chr5:27850703f 2SNP        A         GAA                             A/G
rs51462070
MPD | dbSNP | MGI SNP Detail
Chr5:27850768f 2SNP        G         AGG                             A/G
rs32107099
MPD | dbSNP | MGI SNP Detail
Chr5:27850792f 1SNPGG    GGGGAAGGGGG                                 A/G
rs33575678
MPD | dbSNP | MGI SNP Detail
Chr5:27850813f 3SNP  C     T   C     CCT                             C/T
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs32107096
MPD | dbSNP | MGI SNP Detail
Chr5:27851059f 1SNPCT    CCCCCCCCCCC                                 C/T
rs32113842
MPD | dbSNP | MGI SNP Detail
Chr5:27851168f 1SNPGA     G GGGGG GG                                 A/G
rs32113839
MPD | dbSNP | MGI SNP Detail
Chr5:27851256f 1SNPGG    GGGGAAGGGGGG                                A/G
rs32113836
MPD | dbSNP | MGI SNP Detail
Chr5:27851422f 1SNPCC      CCTTC   C                                 C/T
rs32113003
MPD | dbSNP | MGI SNP Detail
Chr5:27851642f 2SNPAC     C ACCAAAAA  CC                             A/C
rs234728778
MPD | dbSNP | MGI SNP Detail
Chr5:27851866f 1SNP                   TT                             T
rs33215798
MPD | dbSNP | MGI SNP Detail
Chr5:27851897f 1SNP  C     T   C     C                               C/T
rs32113000
MPD | dbSNP | MGI SNP Detail
Chr5:27851994f 1SNPTT  C  T TCCTT TTT                                C/T
rs46205796
MPD | dbSNP | MGI SNP Detail
Chr5:27852070f 2SNP        G         TGG                             G/T
rs51138657
MPD | dbSNP | MGI SNP Detail
Chr5:27852073f 2SNP        T          TT                             T
rs32112997
MPD | dbSNP | MGI SNP Detail
Chr5:27852272f 4SNPGGG     AGA GGGGGGGAA                             A/G
rs33190105
MPD | dbSNP | MGI SNP Detail
Chr5:27852280f 3SNPT T     C         TCC                             C/T
rs29671570
MPD | dbSNP | MGI SNP Detail
Chr5:27852299f 3SNPC C     A         CAA                             A/C
rs32112994
MPD | dbSNP | MGI SNP Detail
Chr5:27852345f 1SNPCC     C CTTCCCCC                                 C/T
rs32112111
MPD | dbSNP | MGI SNP Detail
Chr5:27852453f 1SNPCT    CCCCTTCCCCC                                 C/T
rs32112108
MPD | dbSNP | MGI SNP Detail
Chr5:27852490f 1SNPTT  T TTTTCCTTTTTT                                C/T
rs32112105
MPD | dbSNP | MGI SNP Detail
Chr5:27852525f 1SNPTC    TT TTTTTTTTC                                C/T
rs32111262
MPD | dbSNP | MGI SNP Detail
Chr5:27852657f 1SNPGG    GG GTTGGGGG                                 G/T
rs32111259
MPD | dbSNP | MGI SNP Detail
Chr5:27852703f 1SNPCT  C CCCCCCCCCCC                                 C/T
rs32111257
MPD | dbSNP | MGI SNP Detail
Chr5:27852989f 1SNPTT    TT TAATTTTTT                                A/T
rs33338789
MPD | dbSNP | MGI SNP Detail
Chr5:27853038f 3SNPG G     C         CCC                             C/G
rs32111254
MPD | dbSNP | MGI SNP Detail
Chr5:27853095f 1SNPCC  C  C CT CC CC                                 C/T
rs32110861
MPD | dbSNP | MGI SNP Detail
Chr5:27853114f 1SNPGC    GG GG GG GG                                 C/G
rs32110858
MPD | dbSNP | MGI SNP Detail
Chr5:27853193f 1SNPCC     C CTTCC CC                                 C/T
rs32110855
MPD | dbSNP | MGI SNP Detail
Chr5:27853230f 1SNPCT  C  C CTTCCCC C                                C/T
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs32109932
MPD | dbSNP | MGI SNP Detail
Chr5:27853302f 1SNPTT    TT TCCTT  T                                 C/T
rs32109929
MPD | dbSNP | MGI SNP Detail
Chr5:27853326f 1SNPC     CCCCTCCC CC                                 C/T
rs32109926
MPD | dbSNP | MGI SNP Detail
Chr5:27853327f 1SNPGA    GGGGG GGGGGA                                A/G
rs32109183
MPD | dbSNP | MGI SNP Detail
Chr5:27853404f 1SNPCC  C CCCCTTCCCCCC                                C/T
rs32109180
MPD | dbSNP | MGI SNP Detail
Chr5:27853513f 1SNPTC    TTTTC TTTTTC                                C/T
rs32109177
MPD | dbSNP | MGI SNP Detail
Chr5:27853525f 1SNPCC  C CCCCT CCCCC                                 C/T
rs32109174
MPD | dbSNP | MGI SNP Detail
Chr5:27853782f 1SNPGT  G GGGGGGGGGGG                                 G/T
rs32108511
MPD | dbSNP | MGI SNP Detail
Chr5:27853818f 1SNPTG  T TTTTGGTTTTTG                                G/T
rs32108508
MPD | dbSNP | MGI SNP Detail
Chr5:27853889f 1SNPTT  T TTTTTTTTTTTC                                C/T
rs32108505
MPD | dbSNP | MGI SNP Detail
Chr5:27854070f 1SNPCT  C CCCCTTCCCCCT                                C/T
rs32107742
MPD | dbSNP | MGI SNP Detail
Chr5:27854158f 1SNPTT  T TTTTGGTTTTT                                 G/T
rs32107739
MPD | dbSNP | MGI SNP Detail
Chr5:27854630f 1SNPGA  G GGGGGGGGGGGG                                A/G
rs32107736
MPD | dbSNP | MGI SNP Detail
Chr5:27854831f 1SNPGA  G GGGGGGGGGGGG                                A/G
rs32107063
MPD | dbSNP | MGI SNP Detail
Chr5:27854960f 1SNPGG  G GGGGGGGGGGGA                                A/G
rs32107060
MPD | dbSNP | MGI SNP Detail
Chr5:27854995f 1SNPTG  T TTTTTTT TTTT                                G/T
rs32107057
MPD | dbSNP | MGI SNP Detail
Chr5:27855280f 1SNPGA  G GGGGA GGGGGA                                A/G
rs32107054
MPD | dbSNP | MGI SNP Detail
Chr5:27855430f 1SNPCC  C CCCCTTCCCCCT                                C/T
rs32114294
MPD | dbSNP | MGI SNP Detail
Chr5:27855554f 1SNPCT  C CCCCC CCCCC                                 C/T
rs32113342
MPD | dbSNP | MGI SNP Detail
Chr5:27855555f 1SNPG   G GGGGAAGGGGGA                                A/G
rs32113340
MPD | dbSNP | MGI SNP Detail
Chr5:27855603f 1SNPTC  T TTTTTTTTTTTT                                C/T
rs32113338
MPD | dbSNP | MGI SNP Detail
Chr5:27855625f 1SNPCC  C CCCCAACCCCCC                                A/C
rs32113335
MPD | dbSNP | MGI SNP Detail
Chr5:27855651f 1SNPGG  G GGGGA GGGGGG                                A/G
rs32112552
MPD | dbSNP | MGI SNP Detail
Chr5:27855902f 1SNPCC  C CCCCTTCCCCCC                                C/T
rs32112549
MPD | dbSNP | MGI SNP Detail
Chr5:27855966f 4SNPACA C CCCCAAC AACACCC                             A/C
rs32112546
MPD | dbSNP | MGI SNP Detail
Chr5:27856004f 1SNPAA  A AAAAAAAAAAAG                                A/G
SNP ID
(dbSNP Build 142)
Map Position
(GRCm38)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs32111693
MPD | dbSNP | MGI SNP Detail
Chr5:27856026f 1SNPTG  T TTTTTTTTTTTG                                G/T
rs32111690
MPD | dbSNP | MGI SNP Detail
Chr5:27856102f 1SNPGA  G GGGGGGGGGGGG                                A/G
rs29566664
MPD | dbSNP | MGI SNP Detail
Chr5:27856118f 4SNPTCT C CCCCCCCTTTCCCCC                             C/T
rs32111685
MPD | dbSNP | MGI SNP Detail
Chr5:27856189f 4SNPTTT A AAAAT A TTATAAA                             A/T
rs32110982
MPD | dbSNP | MGI SNP Detail
Chr5:27856227f 1SNPAC  A AAAAAAA AAAA                                A/C
rs32110979
MPD | dbSNP | MGI SNP Detail
Chr5:27856306f 1SNPCC  C CCCCCCCCCCCT                                C/T
rs32110976
MPD | dbSNP | MGI SNP Detail
Chr5:27856320f 1SNPTC  T TTTTTTTTTTTC                                C/T
rs33197275
MPD | dbSNP | MGI SNP Detail
Chr5:27856668f 3SNPA A     G         GGG                             A/G
rs32110233
MPD | dbSNP | MGI SNP Detail
Chr5:27857048f 1SNPGG  G GGGGA G GGGG                                A/G
rs32110230
MPD | dbSNP | MGI SNP Detail
Chr5:27857087f 1SNPCC  C CCCCCCCCCCCT                                C/T

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
04/26/2016
MGI 6.03
The Jackson Laboratory