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Mouse SNPs
Query Results -- Summary
Genome Coordinate Discrepancy
The genome coordinates for mouse SNPs are derived from a different NCBI build of the mouse genome than are the genome coordinates for MGI genes. (see details).
 Symbol
Name
ID
Htr1d
5-hydroxytryptamine (serotonin) receptor 1D
MGI:96276

102 matching SNPs displayed


Legend
 Results are sorted by chromosome/coordinate value. Chromosome transitions are marked by blank rows.
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs31884267
MPD | dbSNP | MGI SNP Detail
Chr4:135978857fHtr1d : Locus-Region1SNPT C   C    C                                    C/T
rs32242839
MPD | dbSNP | MGI SNP Detail
Chr4:135978874fHtr1d : Locus-Region1SNPA G   G    G                                    A/G
rs32394645
MPD | dbSNP | MGI SNP Detail
Chr4:135979033fHtr1d : Locus-Region1SNPA G        G                                    A/G
rs32608806
MPD | dbSNP | MGI SNP Detail
Chr4:135979078fHtr1d : Locus-Region1SNPG A        A                                    A/G
rs32303232
MPD | dbSNP | MGI SNP Detail
Chr4:135979137fHtr1d : Locus-Region1SNPT A        A                                    A/T
rs32405411
MPD | dbSNP | MGI SNP Detail
Chr4:135979376fHtr1d : Locus-Region1SNPAAG        G                                    A/G
rs31840250
MPD | dbSNP | MGI SNP Detail
Chr4:135980162fHtr1d : Intron1SNPC T        T                                    C/T
rs32512406
MPD | dbSNP | MGI SNP Detail
Chr4:135980327fHtr1d : Intron1SNPT C        C                                    C/T
rs32969347
MPD | dbSNP | MGI SNP Detail
Chr4:135980601fHtr1d : Intron1SNPC G                                             C/G
rs32581921
MPD | dbSNP | MGI SNP Detail
Chr4:135980632fHtr1d : Intron1SNPG A                                             A/G
rs32183347
MPD | dbSNP | MGI SNP Detail
Chr4:135980697fHtr1d : Intron1SNPA C                                             A/C
rs32344409
MPD | dbSNP | MGI SNP Detail
Chr4:135980946fHtr1d : Intron1SNPGGA   A                                         A/G
rs32361754
MPD | dbSNP | MGI SNP Detail
Chr4:135981881fHtr1d : Intron1SNPAAG   G    G                                    A/G
rs32587367
MPD | dbSNP | MGI SNP Detail
Chr4:135981927fHtr1d : Intron1SNPGGA   A    A                                    A/G
rs31891655
MPD | dbSNP | MGI SNP Detail
Chr4:135981930fHtr1d : Intron1SNPTTG   G    G                                    G/T
rs32173419
MPD | dbSNP | MGI SNP Detail
Chr4:135982175fHtr1d : Intron1SNPCCT   C    T                                    C/T
rs31832089
MPD | dbSNP | MGI SNP Detail
Chr4:135982258fHtr1d : Intron1SNPTTC        C                                    C/T
rs32466077
MPD | dbSNP | MGI SNP Detail
Chr4:135982369fHtr1d : Intron1SNP TC        C                                    C/T
rs32274188
MPD | dbSNP | MGI SNP Detail
Chr4:135983755fHtr1d : Intron1SNP C         T                                    C/T
rs31982832
MPD | dbSNP | MGI SNP Detail
Chr4:135984240fHtr1d : Intron1SNP      T    C                                    C/T
rs32740879
MPD | dbSNP | MGI SNP Detail
Chr4:135984422fHtr1d : Intron1SNP      A    C                                    A/C
rs32047402
MPD | dbSNP | MGI SNP Detail
Chr4:135984711fHtr1d : Intron1SNP AG        G                                    A/G
rs32902537
MPD | dbSNP | MGI SNP Detail
Chr4:135984747fHtr1d : Intron1SNP GC        C                                    C/G
rs32565689
MPD | dbSNP | MGI SNP Detail
Chr4:135986130fHtr1d : Intron1SNP TG   T    G                                    G/T
rs32844039
MPD | dbSNP | MGI SNP Detail
Chr4:135987167fHtr1d : Intron1SNP AG   A                                         A/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27607461
MPD | dbSNP | MGI SNP Detail
Chr4:135987464fHtr1d : Intron2SNPAAGG GA    G A        G          G      G A   G A/G
rs32486854
MPD | dbSNP | MGI SNP Detail
Chr4:135987502fHtr1d : Intron1SNP AG   A    G                                    A/G
rs32574338
MPD | dbSNP | MGI SNP Detail
Chr4:135987591fHtr1d : Intron1SNP AG   A    G                                    A/G
rs27607460
MPD | dbSNP | MGI SNP Detail
Chr4:135987938fHtr1d : Intron1SNPC TTTT     TTCT       T          T      T C   T C/T
rs27607459
MPD | dbSNP | MGI SNP Detail
Chr4:135988013fHtr1d : Intron1SNPT CCCC   C CCTC       C          C      C C   C C/T
rs32969483
MPD | dbSNP | MGI SNP Detail
Chr4:135988203fHtr1d : Intron1SNP A         G                                    A/G
rs32482162
MPD | dbSNP | MGI SNP Detail
Chr4:135988522fHtr1d : Intron1SNP  A   G    A                                    A/G
rs32424052
MPD | dbSNP | MGI SNP Detail
Chr4:135988548fHtr1d : Intron1SNP  T   A    T                                    A/T
rs31884299
MPD | dbSNP | MGI SNP Detail
Chr4:135988962fHtr1d : Intron1SNP  G   A                                         A/G
rs32502686
MPD | dbSNP | MGI SNP Detail
Chr4:135989031fHtr1d : Intron1SNP GA   G    A                                    A/G
rs32379637
MPD | dbSNP | MGI SNP Detail
Chr4:135989038fHtr1d : Intron1SNP CG   C    G                                    C/G
rs32261662
MPD | dbSNP | MGI SNP Detail
Chr4:135989107fHtr1d : Intron1SNP TC   T    C                                    C/T
rs32926575
MPD | dbSNP | MGI SNP Detail
Chr4:135989275fHtr1d : Intron1SNP GA   G    A                                    A/G
rs27607458
MPD | dbSNP | MGI SNP Detail
Chr4:135989383fHtr1d : Intron2SNPGG CCCG    CCGC       C          C      C     C C/G
rs27607457
MPD | dbSNP | MGI SNP Detail
Chr4:135989486fHtr1d : Intron1SNPG GGGG     GGGG       G          G      G G   A A/G
rs27607456
MPD | dbSNP | MGI SNP Detail
Chr4:135989524fHtr1d : Intron1SNPA AAAA     AAAA       A          A      A A   G A/G
rs27607455
MPD | dbSNP | MGI SNP Detail
Chr4:135989549fHtr1d : Intron2SNPCCA A C    A CA       A          A        C   C A/C
rs27607454
MPD | dbSNP | MGI SNP Detail
Chr4:135989616fHtr1d : Intron2SNPTTCCCCT    C T        C          C      C T   T C/T
rs27607453
MPD | dbSNP | MGI SNP Detail
Chr4:135989639fHtr1d : Intron1SNPC CCCC     CCCC       C          C      C C   G C/G
rs27607452
MPD | dbSNP | MGI SNP Detail
Chr4:135989698fHtr1d : Intron1SNPG GGGG     GGGG       G          G      G G   C C/G
rs32466712
MPD | dbSNP | MGI SNP Detail
Chr4:135989738fHtr1d : Intron1SNP  G   G    T                                    G/T
rs32576585
MPD | dbSNP | MGI SNP Detail
Chr4:135989998fHtr1d : Intron1SNP  A   G    A                                    A/G
rs27607451
MPD | dbSNP | MGI SNP Detail
Chr4:135990835fHtr1d : Intron2SNPG AAAAG    AAGA       A          A      A G   G A/G
rs27607450
MPD | dbSNP | MGI SNP Detail
Chr4:135990888fHtr1d : Intron2SNPT AAAAT    AATA       A          A      A T   T A/T
rs27607449
MPD | dbSNP | MGI SNP Detail
Chr4:135990917fHtr1d : Intron2SNPG AA AG    AAGA       A          A      A A   A A/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs31910362
MPD | dbSNP | MGI SNP Detail
Chr4:135991575fHtr1d : Intron1SNP  A   T    A                                    A/T
rs32031383
MPD | dbSNP | MGI SNP Detail
Chr4:135991661fHtr1d : Intron1SNP  T   C    T                                    C/T
rs32637006
MPD | dbSNP | MGI SNP Detail
Chr4:135992043fHtr1d : Intron1SNP TC   T    C                                    C/T
rs27607448
MPD | dbSNP | MGI SNP Detail
Chr4:135992261fHtr1d : Intron2SNPTTCCCCT    C TC       C          C      C T     C/T
rs27607447
MPD | dbSNP | MGI SNP Detail
Chr4:135992498fHtr1d : Intron2SNPTTCCCCT    CCTC       C          C      C C   T C/T
rs32502693
MPD | dbSNP | MGI SNP Detail
Chr4:135992620fHtr1d : Intron1SNPTTG   T    G                                    G/T
rs27607446
MPD | dbSNP | MGI SNP Detail
Chr4:135992679fHtr1d : Intron2SNPGGA AAG    AAGA       A          A      A G   A A/G
rs27607445
MPD | dbSNP | MGI SNP Detail
Chr4:135994198fHtr1d : Intron1SNPG  AAA   G AAGA       A          A      A G   A A/G
rs27607444
MPD | dbSNP | MGI SNP Detail
Chr4:135994281fHtr1d : Intron1SNPT   CC     CCTC       C          C      C T   C C/T
rs27607443
MPD | dbSNP | MGI SNP Detail
Chr4:135994299fHtr1d : Intron1SNPC    T     TTCT       T          T      T C   T C/T
rs27607442
MPD | dbSNP | MGI SNP Detail
Chr4:135994618fHtr1d : Intron1SNPA GGGG     GGAG       G          G      G G   G A/G
rs27607441
MPD | dbSNP | MGI SNP Detail
Chr4:135994645fHtr1d : Intron1SNPT  TTT     TTTT       T          T      T C   T C/T
rs27607440
MPD | dbSNP | MGI SNP Detail
Chr4:135994715fHtr1d : Intron1SNPC  TTT     TTCT       T          T      T C   T C/T
rs27607439
MPD | dbSNP | MGI SNP Detail
Chr4:135994822fHtr1d : Intron1SNPA          CCAC                  C      C     C A/C
rs27607438
MPD | dbSNP | MGI SNP Detail
Chr4:135995187fHtr1d : Intron1SNPT GGGG     GGTG       G          G      G T   T G/T
rs27607437
MPD | dbSNP | MGI SNP Detail
Chr4:135995314fHtr1d : Intron1SNPC C C       C         C                   C   G C/G
rs27607436
MPD | dbSNP | MGI SNP Detail
Chr4:135995358fHtr1d : Intron1SNPC GGCG   C CCCC       C          C      G C   C C/G
rs27607435
MPD | dbSNP | MGI SNP Detail
Chr4:135996229fHtr1d : Intron1SNPA  AGA     G AG       G          G      A A   A A/G
rs32388585
MPD | dbSNP | MGI SNP Detail
Chr4:135997016fHtr1d : Intron1SNPTT    T    C                                    C/T
rs31796654
MPD | dbSNP | MGI SNP Detail
Chr4:135997017fHtr1d : Intron1SNPAA    A    G                                    A/G
rs31967267
MPD | dbSNP | MGI SNP Detail
Chr4:135997031fHtr1d : Intron1SNPAA    A    G                                    A/G
rs32517689
MPD | dbSNP | MGI SNP Detail
Chr4:135997034fHtr1d : Intron1SNPAA    A    G                                    A/G
rs32526787
MPD | dbSNP | MGI SNP Detail
Chr4:135997103fHtr1d : Intron1SNPTT    T    G                                    G/T
rs27607434
MPD | dbSNP | MGI SNP Detail
Chr4:135997312fHtr1d : Intron2SNPA AAGAA    GGAG       G          G      A A   A A/G
rs27607433
MPD | dbSNP | MGI SNP Detail
Chr4:135997373fHtr1d : Intron1SNPG GGGG     GGGG       G          G      G G   A A/G
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27607432
MPD | dbSNP | MGI SNP Detail
Chr4:135997461fHtr1d : Intron2SNPG GGAGG    AAGA       A          A      G G   G A/G
rs27607431
MPD | dbSNP | MGI SNP Detail
Chr4:135997594fHtr1d : Intron2SNPC CCTCC  C TTCT       T          T      C C   T C/T
rs27607430
MPD | dbSNP | MGI SNP Detail
Chr4:135997613fHtr1d : Intron2SNPA C   A    CCAC       C          C        A   C A/C
rs27607429
MPD | dbSNP | MGI SNP Detail
Chr4:135997786fHtr1d : mRNA-UTR1SNPC CCCC     CCCC       C          C      C C   G C/G
rs27607428
MPD | dbSNP | MGI SNP Detail
Chr4:135997859fHtr1d : mRNA-UTR2SNPGGAAAAG    AAGA       A          A      A G   G A/G
rs27607427
MPD | dbSNP | MGI SNP Detail
Chr4:135997972fHtr1d : mRNA-UTR2SNPTTTT TT    GGTG       G          G      T T   G G/T
rs32952797
MPD | dbSNP | MGI SNP Detail
Chr4:135998017fHtr1d : mRNA-UTR1SNPGGA   G    G                                    A/G
rs27607426
MPD | dbSNP | MGI SNP Detail
Chr4:135998316fHtr1d : mRNA-UTR2SNPGGGGAG     AAGA       A          A      G G   A A/G
rs13478001
MPD | dbSNP | MGI SNP Detail
Chr4:135998441fHtr1d : Coding-NonSynonymous3SNPTTCCCCTTTCCCCTCCCCCCC CCTTTCCTTCCCCTCCTCCCCTTCCCC/T
rs27607425
MPD | dbSNP | MGI SNP Detail
Chr4:135998541fHtr1d : Coding-Synonymous2SNPCCCCTC   C TTCT       T          T      C C   C C/T
rs3023012
MPD | dbSNP | MGI SNP Detail
Chr4:135998847fHtr1d : Coding-Synonymous2SNPG AAGAG    GGGG       G          G      A G   G A/G
rs3023013
MPD | dbSNP | MGI SNP Detail
Chr4:135998868fHtr1d : Coding-Synonymous3SNPTTCCTCT   TTTTT       TC         T      C T   T C/T
rs27607424
MPD | dbSNP | MGI SNP Detail
Chr4:135998886fHtr1d : Coding-Synonymous2SNPAAG G A    GGAG       G          G      G G   G A/G
rs27607423
MPD | dbSNP | MGI SNP Detail
Chr4:135999015fHtr1d : Coding-Synonymous1SNPG AAGA   G GGGG       G          G      A G   G A/G
rs27607422
MPD | dbSNP | MGI SNP Detail
Chr4:135999357fHtr1d : Coding-Synonymous1SNPT   C    T CCTC       C          C      T T   C C/T
rs27607421
MPD | dbSNP | MGI SNP Detail
Chr4:135999593fHtr1d : mRNA-UTR1SNPC   T    C TTCT       T          T      T C   T C/T
rs27607420
MPD | dbSNP | MGI SNP Detail
Chr4:135999670fHtr1d : mRNA-UTR1SNP         G CCG                            G     C/G
rs27607419
MPD | dbSNP | MGI SNP Detail
Chr4:135999749fHtr1d : mRNA-UTR1SNPT   C    C CCTC       C          C            C C/T
rs4224826
MPD | dbSNP | MGI SNP Detail
Chr4:135999841fHtr1d : mRNA-UTR1SNP  G AGG  G A         G                          A/G
rs4224827
MPD | dbSNP | MGI SNP Detail
Chr4:135999848fHtr1d : mRNA-UTR1SNP  C TCC  C T         C                          C/T
rs4224828
MPD | dbSNP | MGI SNP Detail
Chr4:135999864fHtr1d : mRNA-UTR1SNP  A AAT  C A         T                          A/C/T
rs4224829
MPD | dbSNP | MGI SNP Detail
Chr4:135999924fHtr1d : mRNA-UTR1SNP  G AGG  G A         G                          A/G
rs4224830
MPD | dbSNP | MGI SNP Detail
Chr4:135999930fHtr1d : mRNA-UTR2SNPG G CGG  G C G       G                  G G   C C/G
rs4224831
MPD | dbSNP | MGI SNP Detail
Chr4:135999993fHtr1d : mRNA-UTR2SNPC T TTC  C T CT      C                    C     C/T
rs27607418
MPD | dbSNP | MGI SNP Detail
Chr4:136000268fHtr1d : mRNA-UTR1SNPT        T C TC                           T   C C/T
SNP ID
(dbSNP Build 128)
Map Position
(NCBI Build 37)
Gene : dbSNP Function ClassAssays
(ss)
Variation
Type
Allele
Summary
(all strains)
rs27607417
MPD | dbSNP | MGI SNP Detail
Chr4:136000283fHtr1d : mRNA-UTR1SNPG        G T GT       T          T        G   T G/T
rs27607416
MPD | dbSNP | MGI SNP Detail
Chr4:136000731fHtr1d : Locus-Region1SNPA   C    A   AC       C          C        A   A A/C

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last database update
05/08/2013
MGI 5.13
The Jackson Laboratory