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Notch1 Gene Detail
 Symbol
Name
ID
Notch1
Notch gene homolog 1 (Drosophila)
MGI:97363


Nomenclature History
Synonyms 9930111A19Rik, lin-12, Mis6, Motch A, Tan1
Genetic Map
Chromosome 2
15.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 19)

Sequence Map
Chr2:26313423-26372183 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Notch1 ± 2 cM)
Protein SuperFamily: notch protein
TreeFam: TF351641
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000012795 VEGA Gene Model | MGI Sequence Detail 58761 C57BL/6J ± Kb
transcript NM_008714 RefSeq | MGI Sequence Detail 9497 C57BL/6
polypeptide Q01705 UniProt | EBI | MGI Sequence Detail 2531 Not Applicable
For the selected sequences
All sequences(46)
Alleles
and
phenotypes
All alleles(26) : Targeted, knock-out(5) Targeted, other(5) Gene trapped(16)
Homozygotes for targeted null alleles exhibit defects in angiogenic vascular remodeling, and impaired somitogenesis with extensive cell death resulting in lethality by embryonic day 11.5.
Polymorphisms RFLP(5) SNPs within 2kb(316 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(80)
Process anagen, axonogenesis...
Component cytoplasm, integral to membrane...
Function calcium ion binding, chromatin binding...
External Resources: MouseFunc
Expression Literature Summary: (247 records)
Data Summary: Assays (51)    Results (356)    Tissues (222)    Images (147)
Theiler Stages: 1,4,5,9,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,28
  Assay Type Assays   Results
      Western blot 3   9
      RT-PCR 8   73
      RNA in situ 32   228
      Immunohistochemistry 4   17
      Northern blot 2   8
      RNase protection 2   21
cDNA source data(29)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Molecular
reagents
All nucleic(65) Genomic(6) cDNA(35) Primer pair(10) Other(14) Antibodies(6)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000026923
PDB 1YMP, 2QC9
Entrez Gene 18128
VEGA Gene Model OTTMUSG00000012795
International Mouse Knockout Project Status Notch1
Protein
domains
InterPro ID Description
IPR000152 EGF-type aspartate/asparagine hydroxylation site
IPR000742 EGF-like, type 3
IPR000800 Notch domain
IPR001438 EGF-like, type 2
IPR001881 EGF-like calcium-binding
IPR002110 Ankyrin repeat
IPR006209 EGF
IPR006210 EGF-like
IPR008297 Notch
IPR010660 Notch, NOD domain
IPR011656 Notch, NODP domain
IPR013032 EGF-like region, conserved site
IPR013091 EGF calcium-binding
IPR018097 EGF-like calcium-binding, conserved site
IPR020683 Ankyrin repeat-containing domain
Graphical View of Protein Domain Structure
References
(Earliest) J:31835 Weinmaster G et al., "A homolog of Drosophila Notch expressed during mammalian development." Development 1991 Sep;113(1):199-205
(Latest) J:153642 Vlangos CN et al., "Caudal regression in adrenocortical dysplasia (acd) mice is caused by telomere dysfunction with subsequent p53-dependent apoptosis." Dev Biol 2009 Oct 15;334(2):418-28
All references(418)
Other
accession IDs
MGD-MRK-12915, MGD-MRK-18791, MGI:1915375

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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