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Slc12a6 Gene Detail
 Symbol
Name
ID
Slc12a6
solute carrier family 12, member 6
MGI:2135960


Nomenclature History
Synonyms gaxp, KCC3
Genetic Map
Chromosome 2
50.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 2)

Sequence Map
Chr2:112105982-112246476 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Slc12a6 ± 2 cM)
TreeFam: TF313657
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000015141 VEGA Gene Model | MGI Sequence Detail 140495 C57BL/6J ± Kb
transcript NM_133649 RefSeq | MGI Sequence Detail 6631 C57BL/6
polypeptide Q924N4 UniProt | EBI | MGI Sequence Detail 1150 Not Applicable
For the selected sequences
All sequences(28)
Alleles
and
phenotypes
All alleles(23) : Targeted, other(2) Gene trapped(20) Spontaneous(1)
Homozygotes for targeted null mutations exhibit locomotor deficits, reduced exploratory activity, progressive neurodegeneration, hypertension, slow progressive deafness and failure to breed.
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (2)  
Polymorphisms SNPs within 2kb(330 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(20)
Process chloride transport, ion transport...
Component axon, basolateral plasma membrane...
Function cation:chloride symporter activity, potassium ion binding...
External Resources: MouseFunc
Expression Literature Summary: (3 records)
cDNA source data(6)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(8) Genomic(2) cDNA(6)
Microarray probesets(4)
Other database
links
Ensembl Gene Model ENSMUSG00000027130
DFCI TC1582505, TC1597238, TC1603477, TC1610056
Entrez Gene 107723
VEGA Gene Model OTTMUSG00000015141
International Mouse Knockout Project Status Slc12a6
Protein
domains
InterPro ID Description
IPR000076 K-Cl co-transporter
IPR004841 Amino acid permease domain
IPR004842 Na/K/Cl co-transporter superfamily
IPR018491 K/Cl co-transporter, type 1/type 3
Graphical View of Protein Domain Structure
References
(Earliest) J:69625 Hubner CA et al., "Disruption of KCC2 Reveals an Essential Role of K-Cl Cotransport Already in Early Synaptic Inhibition." Neuron 2001 May;30(2):515-24
(Latest) J:138272 Salin-Cantegrel A et al., "HMSN/ACC truncation mutations disrupt brain-type creatine kinase-dependant activation of K+/Cl- co-transporter 3." Hum Mol Genet 2008 Sep 1;17(17):2703-11
All references(16)
Other
accession IDs
MGI:2447470

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory