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Ccdc50 Gene Detail
 Symbol
Name
ID
Ccdc50
coiled-coil domain containing 50
MGI:1914751


Nomenclature History
Synonyms 2610529H08Rik, 5730448P06Rik, D16Bwg1543e
Genetic Map
Chromosome 16
19.6 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 5)

Sequence Map
Chr16:27388955-27452304 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; cattle; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Ccdc50 ± 2 cM)
TreeFam: TF325391
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000023490 VEGA Gene Model | MGI Sequence Detail 63350 C57BL/6J ± Kb
transcript NM_026202 RefSeq | MGI Sequence Detail 6981 -
polypeptide Q810U5 UniProt | EBI | MGI Sequence Detail 305 Not Applicable
For the selected sequences
All sequences(51)
Alleles
and
phenotypes
All alleles(5) : Gene trapped(5)
Polymorphisms SNPs within 2kb(266 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(1)
Component cytoplasm
External Resources: MouseFunc
Expression Literature Summary: (3 records)
Data Summary: Assays (14)    Results (125)    Tissues (30)
Theiler Stages: 22,25,26,28
  Assay Type Assays   Results
      Western blot 1   3
      RT-PCR 11   66
      Immunohistochemistry 1   46
      Northern blot 1   10
cDNA source data(167)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(181) cDNA(168) Primer pair(13) Antibodies(1)
Microarray probesets(5)
Other database
links
Ensembl Gene Model ENSMUSG00000038127
DoTS DT.101166449, DT.101368393, DT.101386786, DT.522230
UniGene 258985
DFCI TC1580594, TC1593317, TC1602011, TC1634923, TC1655816, TC1666565
NIA Mouse Gene Index U016978
Entrez Gene 67501
VEGA Gene Model OTTMUSG00000023490
International Mouse Knockout Project Status Ccdc50
References
(Earliest) J:44483 Brady KP et al., "Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis." Genome Res 1997 Nov;7(11):1085-93
(Latest) J:130365 Singh S et al., "Transcriptional profiling of the megabladder mouse: a unique model of bladder dysmorphogenesis." Dev Dyn 2008 Jan;237(1):170-86
All references(11)
Other
accession IDs
MGD-MRK-35702, MGI:107237, MGI:1917850, MGI:2140546, MGI:2146653

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory