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Scd1 Gene Detail
 Symbol
Name
ID
Scd1
stearoyl-Coenzyme A desaturase 1
MGI:98239


Nomenclature History
Synonyms SCD, Scd-1, stearoyl-CoA desaturase
Genetic Map
Chromosome 19
43.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 25)

Sequence Map
Chr19:44468945-44482043 bp, - strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
chimpanzee; dog, domestic; rat    (Mammalian Orthology)
Protein SuperFamily: acyl-CoA desaturase
TreeFam: TF313251
Sequences
Representative Sequences Length Strain/Species Flank
genomic 20249 NCBI Gene Model | MGI Sequence Detail 13099 C57BL/6J ± Kb
transcript NM_009127 RefSeq | MGI Sequence Detail 4844 C57BL/6
polypeptide P13516 UniProt | EBI | MGI Sequence Detail 355 Not Applicable
For the selected sequences
All sequences(37)
Alleles
and
phenotypes
All alleles(13) : Targeted, knock-out(1) Targeted, other(1) Gene trapped(6) Spontaneous(4) Chemically induced(1)
Homozygotes for targeted and spontaneous mutations exhibit alopecia, scaly skin, sebaceous gland hypoplasia, impaired ocular lubrication and synthesis and storage of triglycerides, higher lipid oxidation, reduced growth, and lower fertility in females.
Phenotype Images (2)  
Polymorphisms RFLP(4) SNPs within 2kb(73 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(19)
Process brown fat cell differentiation, fatty acid biosynthetic process...
Component endoplasmic reticulum, integral to membrane...
Function iron ion binding, oxidoreductase activity...
External Resources: MouseFunc
Expression Literature Summary: (8 records)
Data Summary: Assays (7)    Results (16)    Tissues (5)    Images (4)
Theiler Stages: 22,23,28
  Assay Type Assays   Results
      RT-PCR 2   6
      RNA in situ 1   1
      Northern blot 4   9
cDNA source data(25)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Molecular
reagents
All nucleic(38) Genomic(7) cDNA(28) Primer pair(3)
Microarray probesets(6)
Pathways
oleate biosynthesis II (animals)
Other database
links
EC 1.14.19.1
Ensembl Gene Model ENSMUSG00000037071
NIA Mouse Gene Index U039075
Entrez Gene 20249
International Mouse Knockout Project Status Scd1
Protein
domains
InterPro ID Description
IPR001522 Fatty acid desaturase, type 1, C-terminal
IPR005804 Fatty acid desaturase, type 1
IPR015876 Fatty acid desaturase, type 1, core
Graphical View of Protein Domain Structure
References
(Earliest) J:13143 Gates AH et al., "Hereditary absence of sebaceous glands in the mouse." Science 1965;148():1471-1473
(Latest) J:152631 Sampath H et al., "Skin-specific deletion of stearoyl-CoA desaturase-1 alters skin lipid composition and protects mice from high fat diet-induced obesity." J Biol Chem 2009 Jul 24;284(30):19961-73
All references(95)
Other
accession IDs
MGD-MRK-1014, MGD-MRK-14305, MGD-MRK-14307, MGI:2147455, MGI:2147495, MGI:87858

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory