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Rag1 Gene Detail
 Symbol
Name
ID
Rag1
recombination activating gene 1
MGI:97848


Nomenclature History
Synonyms Rag-1
Genetic Map
Chromosome 2
56.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 18)

Sequence Map
Chr2:101478439-101489658 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Rag1 ± 2 cM)
TreeFam: TF331926
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000014584 VEGA Gene Model | MGI Sequence Detail 11220 C57BL/6J ± Kb
transcript NM_009019 RefSeq | MGI Sequence Detail 6669 C57BL/6
polypeptide P15919 UniProt | EBI | MGI Sequence Detail 1040 Not Applicable
For the selected sequences
All sequences(19)
Alleles
and
phenotypes
All alleles(8) : Targeted, knock-out(2) Targeted, other(5) Chemically induced(1)
Homozygotes for targeted null mutations exhibit arrested development of T and B cell maturation at the CD4-8- thymocyte or B220+/CD43+pro-B cell stage due to inability to undergo V(D)J recombination.
Associated Human Diseases (3)   Alleles Annotated to Human Diseases (1)   Phenotype Images (1)  
Polymorphisms RFLP(4) SNPs within 2kb(115 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(18)
Process B cell differentiation, death...
Component intracellular, nucleus...
Function DNA binding, endonuclease activity...
External Resources: MouseFunc
Expression Literature Summary: (16 records)
Data Summary: Assays (18)    Results (114)    Tissues (67)    Images (1)
Theiler Stages: 10,13,15,16,18,19,20,21,22,23,24,25,26,28
  Assay Type Assays   Results
      RT-PCR 15   103
      Northern blot 3   11
cDNA source data(24)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(45) Genomic(13) cDNA(26) Primer pair(5) Other(1)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000061311
DoTS DT.94226024
UniGene 828
PDB 1RMD, 3GNA, 3GNB
DFCI TC1609480, TC1637274
Entrez Gene 19373
VEGA Gene Model OTTMUSG00000014584
International Mouse Knockout Project Status Rag1
Protein
domains
InterPro ID Description
IPR001841 Zinc finger, RING-type
IPR013087 Zinc finger, C2H2-type/integrase, DNA-binding
IPR015880 Zinc finger, C2H2-like
IPR017907 Zinc finger, RING-type, conserved site
IPR018957 Zinc finger, C3HC4 RING-type
IPR019485 Zinc finger, V(D)J recombination-activating protein 1
Graphical View of Protein Domain Structure
References
(Earliest) J:10163 Schatz DG et al., "The V(D)J recombination activating gene, RAG-1." Cell 1989 Dec 22;59(6):1035-48
(Latest) J:154208 Schymeinsky J et al., "A fundamental role of mAbp1 in neutrophils: impact on beta(2) integrin-mediated phagocytosis and adhesion in vivo." Blood 2009 Nov 5;114(19):4209-20
All references(521)
Other
accession IDs
MGD-MRK-13753, MGD-MRK-13755

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory