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Prkcz Gene Detail
 Symbol
Name
ID
Prkcz
protein kinase C, zeta
MGI:97602


Nomenclature History
Synonyms Pkcz, zetaPKC
Genetic Map
Chromosome 4
83.0 cM, cytoband E2
Detailed Genetic Map ± 1 cM
 
Mapping data( 4)

Sequence Map
Chr4:154634238-154735470 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat; sheep    (Mammalian Orthology)
Comparative Map (Mouse/Human Prkcz ± 2 cM)
Protein SuperFamily: protein kinase C, zeta/iota types
TreeFam: TF102004
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000010601 VEGA Gene Model | MGI Sequence Detail 101233 C57BL/6J ± Kb
transcript NM_008860 RefSeq | MGI Sequence Detail 4283 C57BL/6
polypeptide Q02956 UniProt | EBI | MGI Sequence Detail 592 Not Applicable
For the selected sequences
All sequences(42)
Alleles
and
phenotypes
All alleles(11) : Targeted, other(1) Gene trapped(10)
Young, not mature, homozygous null mice have reduced B cell numbers and abnormal secondary lymph organ structure. Young mice have fewer Peyer's patches, poor delineation of B & T cell zones, and fewer follicles of small size. Spleens have less prominent B cell follicles and abnormal marginal zones.
Polymorphisms SNPs within 2kb(504 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(21)
Process intracellular signaling cascade, microtubule cytoskeleton organization...
Component apical cortex, cell cortex...
Function ATP binding, kinase activity...
External Resources: MouseFunc
Expression Literature Summary: (25 records)
Data Summary: Assays (9)    Results (301)    Tissues (222)    Images (67)
Theiler Stages: 3,4,5,11,13,15,17,20,21,22,23,24,25,26,28
  Assay Type Assays   Results
      Western blot 2   13
      RT-PCR 3   56
      RNA in situ 2   225
      Immunohistochemistry 2   7
cDNA source data(60)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Molecular
reagents
All nucleic(70) Genomic(3) cDNA(60) Primer pair(7) Antibodies(3)
Microarray probesets(5)
Other database
links
EC 2.7.11.13
Ensembl Gene Model ENSMUSG00000029053
DoTS DT.101361174, DT.40133926, DT.40151057, DT.491666
UniGene 28561
DFCI TC1575193, TC1586314, TC1597109, TC1714309
Entrez Gene 18762
VEGA Gene Model OTTMUSG00000010601
International Mouse Knockout Project Status Prkcz
Protein
domains
InterPro ID Description
IPR000270 Octicosapeptide/Phox/Bem1p
IPR000719 Protein kinase, catalytic domain
IPR000961 AGC-kinase, C-terminal
IPR002219 Protein kinase C-like, phorbol ester/diacylglycerol binding
IPR002290 Serine/threonine-protein kinase domain
IPR008271 Serine/threonine-protein kinase, active site
IPR011009 Protein kinase-like domain
IPR012233 Protein kinase C, zeta/iota
IPR015745 Protein kinase C
IPR017441 Protein kinase, ATP binding site
IPR017442 Serine/threonine-protein kinase-like domain
IPR017892 Protein kinase, C-terminal
IPR020454 Diacylglycerol/phorbol-ester binding
Graphical View of Protein Domain Structure
References
(Earliest) J:10128 Wada H et al., "Cell type-specific expression of the genes for the protein kinase C family: down regulation of mRNAs for PKC alpha and nPKC epsilon upon in vitro differentiation of a mouse neuroblastoma cell line neuro 2a." Biochem Biophys Res Commun 1989 Nov 30;165(1):533-8
(Latest) J:152174 Weimer JM et al., "MARCKS modulates radial progenitor placement, proliferation and organization in the developing cerebral cortex." Development 2009 Sep;136(17):2965-75
All references(65)
Other
accession IDs
MGD-MRK-13334, MGI:2140186, MGI:2140684, MGI:2140714

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory