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Myod1 Gene Detail
 Symbol
Name
ID
Myod1
myogenic differentiation 1
MGI:97275


Nomenclature History
Synonyms bHLHc1, MYF3, MyoD, Myod-1
Genetic Map
Chromosome 7
23.5 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 37)

Sequence Map
Chr7:53631852-53634465 bp, + strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Myod1 ± 2 cM)
Protein SuperFamily: human myogenin
TreeFam: TF316344
Sequences
Representative Sequences Length Strain/Species Flank
genomic 17927 NCBI Gene Model | MGI Sequence Detail 2614 C57BL/6J ± Kb
transcript NM_010866 RefSeq | MGI Sequence Detail 1854 C57BL/6
polypeptide P10085 UniProt | EBI | MGI Sequence Detail 318 Not Applicable
For the selected sequences
All sequences(19)
Alleles
and
phenotypes
All alleles(5) : Targeted, knock-out(3) Targeted, other(2)
Mice homozygous for a knock-out allele exhibit abnormal muscle development.
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (1)   Phenotype Images (2)  
Polymorphisms RFLP(20) SNPs within 2kb(32 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (29 annotations)
Process cell differentiation, multicellular organismal development...
Component nucleus, transcription factor complex...
Function DNA binding, protein binding...
External Resources: FuncBase
Expression Literature Summary: (188 records)
Data Summary: Assays (54)    Results (281)    Tissues (110)    Images (97)
Theiler Stages: 2,3,4,5,9,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,28
  Assay Type Assays   Results
      RT-PCR 18   103
      RNA in situ 23   142
      Immunohistochemistry 9   24
      Northern blot 4   12
cDNA source data(31)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(68) Genomic(8) cDNA(37) Primer pair(7) Other(16) Antibodies(6)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000009471
DoTS DT.101714782, DT.94230569
Consensus CDS Project CCDS21277.1
UniGene 1526
PDB 1MDY
DFCI TC1583304
NIA Mouse Gene Index U008102
Entrez Gene 17927
International Mouse Knockout Project Status Myod1
Protein
domains
InterPro ID Description
IPR001092 Helix-loop-helix DNA-binding domain
IPR002546 Myogenic basic muscle-specific protein
IPR011598 Helix-loop-helix DNA-binding
Graphical View of Protein Domain Structure
References
(Earliest) J:20067 Davis RL et al., "Expression of a single transfected cDNA converts fibroblasts to myoblasts." Cell 1987 Dec 24;51(6):987-1000
(Latest) J:155378 Stauber M et al., "Differential axial requirements for lunatic fringe and Hes7 transcription during mouse somitogenesis." PLoS One 2009;4(11):e7996
All references(324)
Other
accession IDs
MGD-MRK-12773, MGD-MRK-12774, MGI:2141988

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/06/2010
MGI_4.32
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The Jackson Laboratory