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Mmp9 Gene Detail
 Symbol
Name
ID
Mmp9
matrix metallopeptidase 9
MGI:97011


Nomenclature History
Synonyms B/MMP9, Clg4b, Gel B, Gelatinase B, gelatinase B, MMP-9
Genetic Map
Chromosome 2
96.0 cM, cytoband H1-H2
Detailed Genetic Map ± 1 cM
 
Mapping data( 8)

Sequence Map
Chr2:164766280-164781350 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Mmp9 ± 2 cM)
Protein SuperFamily: gelatinase A
TreeFam: TF315428
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000001184 VEGA Gene Model | MGI Sequence Detail 15071 C57BL/6J ± Kb
transcript NM_013599 RefSeq | MGI Sequence Detail 3185 -
polypeptide P41245 UniProt | EBI | MGI Sequence Detail 730 Not Applicable
For the selected sequences
All sequences(27)
Alleles
and
phenotypes
All alleles(4) : Targeted, knock-out(4)
Null mutants have short long bones with compensatory growth via delayed ossification and apoptosis of hypertrophic chondroctyes. Mutants are protected against ischemic brain injury, damage caused by myocardial infarction, and allergic airway inflammation.
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (1)  
Polymorphisms All PCR and RFLP(2) : PCR(1) RFLP(1) SNPs within 2kb(89 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(22)
Process collagen catabolic process, extracellular matrix organization...
Component extracellular region, proteinaceous extracellular matrix...
Function calcium ion binding, hydrolase activity...
External Resources: MouseFunc
Expression Literature Summary: (87 records)
Data Summary: Assays (22)    Results (68)    Tissues (37)    Images (15)
Theiler Stages: 1,2,3,4,11,17,19,20,21,22,23,24,26,28
  Assay Type Assays   Results
      Western blot 1   3
      RT-PCR 11   39
      RNA in situ 7   14
      Immunohistochemistry 2   8
      Northern blot 1   4
cDNA source data(20)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Molecular
reagents
All nucleic(38) Genomic(3) cDNA(21) Primer pair(10) Other(4) Antibodies(3)
Microarray probesets(3)
Other database
links
EC 3.4.24.35
Ensembl Gene Model ENSMUSG00000017737
DoTS DT.491016
DFCI TC1576282
NIA Mouse Gene Index U002824
Entrez Gene 17395
VEGA Gene Model OTTMUSG00000001184
International Mouse Knockout Project Status Mmp9
Protein
domains
InterPro ID Description
IPR000562 Type II fibronectin, collagen-binding
IPR000585 Hemopexin/matrixin
IPR001818 Peptidase M10A/M12B, matrixin/adamalysin
IPR002477 Peptidoglycan binding-like
IPR006025 Peptidase M, neutral zinc metallopeptidases, zinc-binding site
IPR006026 Peptidase, metallopeptidases
IPR006970 PT repeat
IPR013806 Kringle-like fold
IPR018486 Hemopexin/matrixin, conserved site
IPR018487 Hemopexin/matrixin, repeat
Graphical View of Protein Domain Structure
References
(Earliest) J:3961 Tanaka H et al., "Molecular cloning and expression of the mouse 105-kDa gelatinase cDNA." Biochem Biophys Res Commun 1993 Feb 15;190(3):732-40
(Latest) J:153449 Sabeh F et al., "Secreted versus membrane-anchored collagenases: relative roles in fibroblast-dependent collagenolysis and invasion." J Biol Chem 2009 Aug 21;284(34):23001-11
All references(285)
Other
accession IDs
MGD-MRK-12281, MGD-MRK-2014, MGI:2139414

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory