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Hoxc11 Gene Detail
 Symbol
Name
ID
Hoxc11
homeobox C11
MGI:96193


Nomenclature History
Synonyms Hox-3.7
Genetic Map
Chromosome 15
57.4 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 3)

Sequence Map
Chr15:102784957-102787132 bp, + strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Hoxc11 ± 2 cM)
TreeFam: TF350668
Sequences
Representative Sequences Length Strain/Species Flank
genomic 109663 NCBI Gene Model | MGI Sequence Detail 2176 C57BL/6J ± Kb
transcript NM_001024842 RefSeq | MGI Sequence Detail 915 -
polypeptide P31313 UniProt | EBI | MGI Sequence Detail 304 Not Applicable
For the selected sequences
All sequences(11)
Alleles
and
phenotypes
All alleles(1) : Targeted, knock-out(1)
Polymorphisms SNPs within 2kb(4 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (18 annotations)
Process anterior/posterior pattern formation, embryonic digit morphogenesis...
Component nucleus
Function DNA binding, sequence-specific DNA binding...
External Resources: FuncBase
Expression Literature Summary: (11 records)
Data Summary: Assays (5)    Results (36)    Tissues (27)    Images (9)
Theiler Stages: 19,20,21,23,25
  Assay Type Assays   Results
      RT-PCR 1   3
      RNA in situ 4   33
cDNA source data(4)
External Resources: GEO 
Molecular
reagents
All nucleic(11) Genomic(5) cDNA(4) Primer pair(1) Other(1)
Microarray probesets(1)
Other database
links
Ensembl Gene Model ENSMUSG00000001656
DoTS DT.40180807
Consensus CDS Project CCDS27892.1
UniGene 37692
DFCI TC1643401
Entrez Gene 109663
International Mouse Knockout Project Status Hoxc11
Protein
domains
InterPro ID Description
IPR001356 Homeobox
IPR009057 Homeodomain-like
IPR012287 Homeodomain-related
IPR017970 Homeobox, conserved site
IPR020479 Homeobox, region
Graphical View of Protein Domain Structure
References
(Earliest) J:1775 Singh G et al., "Identification of 10 murine homeobox genes." Proc Natl Acad Sci U S A 1991 Dec 1;88(23):10706-10
(Latest) J:154470 Yallowitz AR et al., "Non-homeodomain regions of Hox proteins mediate activation versus repression of Six2 via a single enhancer site in vivo." Dev Biol 2009 Nov 1;335(1):156-65
All references(22)
Other
accession IDs
MGD-MRK-10845, MGD-MRK-10894

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/06/2010
MGI_4.32
Web browser compatibility
The Jackson Laboratory