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Hoxa13 Gene Detail
 Symbol
Name
ID
Hoxa13
homeobox A13
MGI:96173


Nomenclature History
Synonyms Hox-1.10
Genetic Map
Chromosome 6
26.33 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 17)

Sequence Map
Chr6:52208903-52210768 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Hoxa13 ± 2 cM)
TreeFam: TF330813
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000026296 VEGA Gene Model | MGI Sequence Detail 1866 C57BL/6J ± Kb
transcript NM_008264 RefSeq | MGI Sequence Detail 1318 -
polypeptide Q62424 UniProt | EBI | MGI Sequence Detail 386 Not Applicable
For the selected sequences
All sequences(17)
Alleles
and
phenotypes
All alleles(6) : Targeted, knock-out(2) Targeted, other(3) Spontaneous(1)
Homozygotes for a targeted null mutation exhibit agenesis of both the urinary bladder and the caudal portion of the Mullerian ducts, premature stenosis of the umbilical arteries, loss of the most anterior digit of all feet, and death around mid-gestation.
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (2)   Phenotype Images (1)  
Polymorphisms RFLP(1) SNPs within 2kb(1 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(21)
Process anatomical structure morphogenesis, branching involved in prostate gland morphogenesis...
Component nucleus
Function DNA binding, protein binding...
External Resources: MouseFunc
Expression Literature Summary: (47 records)
Data Summary: Assays (22)    Results (170)    Tissues (107)    Images (47)
Theiler Stages: 17,18,19,20,21,23,24,25,28
  Assay Type Assays   Results
      Western blot 3   10
      RT-PCR 8   80
      In situ reporter (knock in) 1   24
      RNA in situ 9   55
      RNase protection 1   1
cDNA source data(3)
External Resources: GEO 
Molecular
reagents
All nucleic(21) Genomic(10) cDNA(3) Primer pair(4) Other(4) Antibodies(2)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000038203
DoTS DT.110476099, DT.91567453
UniGene 377086
DFCI TC1593618, TC1596727
Entrez Gene 15398
VEGA Gene Model OTTMUSG00000026296
International Mouse Knockout Project Status Hoxa13
Protein
domains
InterPro ID Description
IPR001356 Homeobox
IPR009057 Homeodomain-like
IPR012287 Homeodomain-related
IPR017970 Homeobox, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:64253 Hummel KP et al., "Hd - hypodactyly" Mouse News Lett 1966;34():31
(Latest) J:153164 Cocquempot O et al., "Fork stalling and template switching as a mechanism for polyalanine tract expansion affecting the DYC mutant of HOXD13, a new murine model of synpolydactyly." Genetics 2009 Sep;183(1):23-30
All references(81)
Other
accession IDs
MGD-MRK-10679, MGD-MRK-10816, MGD-MRK-10874, MGI:96061

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory