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Ptpn6 Gene Detail
 Symbol
Name
ID
Ptpn6
protein tyrosine phosphatase, non-receptor type 6
MGI:96055


Nomenclature History
Synonyms hcp, Hcph, Ptp1C, SHP-1, Spin
Genetic Map
Chromosome 6
60.22 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 15)

Sequence Map
Chr6:124670735-124683584 bp, - strand
(From Ensembl annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Ptpn6 ± 2 cM)
Protein SuperFamily: non-receptor tyrosine-protein phosphatase, 6/11 types
TreeFam: TF351632
Sequences
Representative Sequences Length Strain/Species Flank
genomic ENSMUSG00000004266 Ensembl Gene Model | MGI Sequence Detail 12850 C57BL/6J ± Kb
transcript NM_001077705 RefSeq | MGI Sequence Detail 2222 C57BL/6
polypeptide P29351 UniProt | EBI | MGI Sequence Detail 595 Not Applicable
For the selected sequences
All sequences(40)
Alleles
and
phenotypes
All alleles(6) : Targeted, other(1) Gene trapped(1) Spontaneous(3) Chemically induced(1)
Homozygous mutants are immunodeficient and autoimmune and exhibit neutrophilic skin lesions that disrupt hair follicles and give the motheaten appearance. Alleles vary in severity, with death occurring at 6-9 weeks postnatally due to severe pneumonitis.
Phenotype Images (3)  
Polymorphisms All PCR and RFLP(2) : PCR(1) RFLP(1) SNPs within 2kb(46 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (28 annotations)
Process B cell receptor signaling pathway, cytokine-mediated signaling pathway...
Component alpha-beta T cell receptor complex, cytoplasm...
Function hydrolase activity, phosphatase activity...
External Resources: FuncBase
Expression Literature Summary: (4 records)
Data Summary: Assays (2)    Results (5)    Tissues (5)
Theiler Stages: 10,18,21,23,25
  Assay Type Assays   Results
      RT-PCR 1   1
      Northern blot 1   4
cDNA source data(63)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(70) Genomic(3) cDNA(65) Primer pair(2)
Microarray probesets(2)
Other database
links
EC 3.1.3.48
Ensembl Gene Model ENSMUSG00000004266
DoTS DT.493244, DT.91308995, DT.94207958
Consensus CDS Project CCDS39628.1
UniGene 271799
DFCI TC1577727, TC1596434, TC1633761, TC1679288
NIA Mouse Gene Index U027845
Entrez Gene 15170
International Mouse Knockout Project Status Ptpn6
Protein
domains
InterPro ID Description
IPR000242 Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000387 Dual-specific/protein-tyrosine phosphatase, conserved region
IPR000980 SH2 motif
IPR012152 Protein-tyrosine phosphatase, non-receptor type-6, -11
IPR016130 Protein-tyrosine phosphatase, active site
Graphical View of Protein Domain Structure
References
(Earliest) J:13520 Green MC, "Cribriform degeneration, cri" Mouse News Lett 1971;45():29
(Latest) J:155341 Inoue T et al., "SHP-1 exhibits a pro-apoptotic function in antigen-stimulated mast cells: positive regulation of mitochondrial death pathways and negative regulation of survival signaling pathways." Mol Immunol 2009 Dec;47(2-3):222-32
All references(151)
Other
accession IDs
MGD-MRK-10672, MGD-MRK-12181

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
02/06/2010
MGI_4.32
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