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Hc Gene Detail
 Symbol
Name
ID
Hc
hemolytic complement
MGI:96031


Nomenclature History
Synonyms C5, C5a, He
Genetic Map
Chromosome 2
23.5 cM, cytoband cen-C1
Detailed Genetic Map ± 1 cM
 
Mapping data( 71)

Sequence Map
Chr2:34838851-34916958 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; pig, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Hc ± 2 cM)
Protein SuperFamily: alpha-2-macroglobulin
TreeFam: TF313285
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000012274 VEGA Gene Model | MGI Sequence Detail 78108 C57BL/6J ± Kb
transcript NM_010406 RefSeq | MGI Sequence Detail 5403 -
polypeptide P06684 UniProt | EBI | MGI Sequence Detail 1680 Not Applicable
For the selected sequences
All sequences(18)
Alleles
and
phenotypes
All alleles(2) : Spontaneous(1) Other(1)
Macrophage from mice homozygous for disruptions of this gene do not secrete complement C5.

The 2 bp deletion found in A/J and AKR/J strains is associated with susceptibility to allergen-induced bronchial hyperresponsiveness and is a candidate for QTL Abhr2.

Polymorphisms All PCR and RFLP(14) : PCR(1) RFLP(13) SNPs within 2kb(327 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(13)
Process complement activation, alternative pathway, complement activation, classical pathway...
Component extracellular region, extracellular space...
Function endopeptidase inhibitor activity, protein binding...
External Resources: MouseFunc
Expression Literature Summary: (1 records)
Data Summary: Assays (1)    Results (41)    Tissues (30)
Theiler Stages: 16,18,20,21,23,25,28
  Assay Type Assays   Results
      RT-PCR 1   41
cDNA source data(35)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(49) Genomic(11) cDNA(35) Primer pair(2) Other(1)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000026874
DoTS DT.491887
UniGene 2168
DFCI TC1584853
NIA Mouse Gene Index U022536
Entrez Gene 15139
VEGA Gene Model OTTMUSG00000012274
International Mouse Knockout Project Status Hc
Protein
domains
InterPro ID Description
IPR000020 Anaphylatoxin/fibulin
IPR001134 Netrin domain
IPR001599 Alpha-2-macroglobulin
IPR001840 Complement C3a/C4a/C5a anaphylatoxin
IPR002890 Alpha-2-macroglobulin, N-terminal
IPR008993 TIMP-like, OB-fold
IPR009048 Alpha-macroglobulin, receptor-binding
IPR011625 Alpha-2-macroglobulin, N-terminal 2
IPR011626 A-macroglobulin complement component
IPR018081 Anaphylatoxin
IPR018933 Netrin module, non-TIMP type
IPR019742 Alpha-2-macroglobulin, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:12959 HERZENBERG LA et al., "A gene locus concerned with hemolytic complement in Mus musculus." Genetics 1963 May;48():711-5
(Latest) J:146538 Miwa T et al., "Complement-dependent T-cell lymphopenia caused by thymocyte deletion of the membrane complement regulator Crry." Blood 2009 Mar 19;113(12):2684-94
All references(153)
Other
accession IDs
MGD-MRK-10645, MGD-MRK-10689, MGD-MRK-1703

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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