About   Help   FAQ
H2-T18 Gene Detail
 Symbol
Name
ID
H2-T18
histocompatibility 2, T region locus 18
MGI:95950


Nomenclature History
Synonyms H-2T18, TL Ag, Tla
Genetic Map
Chromosome 17
19.78 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 19)

Sequence Map
Chr17:36322516-36327096 bp, - strand
(From Ensembl annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
Protein SuperFamily: class I histocompatibility antigen
TreeFam: TF336617
Sequences
Representative Sequences Length Strain/Species Flank
genomic ENSMUSG00000054128 Ensembl Gene Model | MGI Sequence Detail 4581 C57BL/6J ± Kb
transcript AK153910 GenBank | EMBL | DDBJ | MGI Sequence Detail 2105 NOD
polypeptide Q8CGD8 UniProt | EBI | MGI Sequence Detail 395 Not Applicable
For the selected sequences
All sequences(17)
Alleles
and
phenotypes
This locus controls presence of a cell surface antigen on thymic and intestinal epithelium. Among inbred strains at least 5 alleles are known determining different antigenic specificities, as well as an allele determining absence of antigen. C57BL/6 mice carry a deletion of this gene.
Polymorphisms RFLP(7) SNPs within 2kb(24 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(3)
Process protein homotetramerization
Component integral to membrane
Function protein binding
External Resources: MouseFunc
Expression Literature Summary: (1 records)
cDNA source data(1)
Molecular
reagents
All nucleic(24) Genomic(19) cDNA(2) Other(3)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000054128 (also overlaps H2-T3)
International Mouse Knockout Project Status H2-T18
Protein
domains
InterPro ID Description
IPR001039 MHC class I, alpha chain, alpha1/alpha2
IPR003006 Immunoglobulin/major histocompatibility complex, conserved site
IPR003597 Immunoglobulin C1-set
IPR007110 Immunoglobulin-like
IPR011161 MHC class I-like antigen recognition
IPR011162 MHC classes I/II-like antigen recognition protein
IPR013783 Immunoglobulin-like fold
References
(Earliest) J:13118 BOYSE EA et al., "GENETIC DETERMINATION OF THE TL (THYMUSLEUKAEMIA) ANTIGEN IN THE MOUSE." Nature 1964 Feb 22;201():779
(Latest) J:142515 Olivares-Villagomez D et al., "Thymus leukemia antigen controls intraepithelial lymphocyte function and inflammatory bowel disease." Proc Natl Acad Sci U S A 2008 Nov 18;105(46):17931-6
All references(50)
Other
accession IDs
MGD-MRK-10433, MGD-MRK-10546, MGD-MRK-15131

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/20/2009
MGI_4.31
Web browser compatibility
The Jackson Laboratory