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Amy1 Gene Detail
 Symbol
Name
ID
Amy1
amylase 1, salivary
MGI:88019


Nomenclature History
Synonyms Amy-1
Genetic Map
Chromosome 3
50.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 66)

Sequence Map
Chr3:113258871-113280748 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Amy1 ± 2 cM)
Protein SuperFamily: alpha-amylase
TreeFam: TF312850
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000022392 VEGA Gene Model | MGI Sequence Detail 21878 C57BL/6J ± Kb
transcript NM_007446 RefSeq | MGI Sequence Detail 1797 C57BL/6
polypeptide P00687 UniProt | EBI | MGI Sequence Detail 511 Not Applicable
For the selected sequences
All sequences(31)
Alleles
and
phenotypes
All alleles(6) : Targeted, other(1) Other(5)
Polymorphisms All PCR and RFLP(11) : PCR(2) RFLP(9) SNPs within 2kb(41 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(14)
Process carbohydrate metabolic process, metabolic process...
Component extracellular region, extracellular space...
Function alpha-amylase activity, amylase activity...
External Resources: MouseFunc
Expression Literature Summary: (1 records)
Data Summary: Assays (2)    Results (7)    Tissues (7)    Images (2)
Theiler Stages: 19,21,22,23,26,28
  Assay Type Assays   Results
      RT-PCR 1   6
      RNA in situ 1   1
cDNA source data(279)
External Resources: GEO 
Molecular
reagents
All nucleic(290) Genomic(6) cDNA(279) Primer pair(3) Other(2)
Microarray probesets(2)
Pathways
starch degradation
Other database
links
EC 3.2.1.1
Ensembl Gene Model ENSMUSG00000074264
DoTS DT.111056656, DT.111056729, DT.111056757, DT.91443848, DT.94155725, DT.94166549, DT.97378097
UniGene 439727
DFCI TC1572793
Entrez Gene 11722
VEGA Gene Model OTTMUSG00000022392
International Mouse Knockout Project Status Amy1
Protein
domains
InterPro ID Description
IPR006046 Glycoside hydrolase family 13
IPR006047 Glycosyl hydrolase, family 13, catalytic domain
IPR006048 Alpha-amylase, C-terminal all beta
IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic domain
IPR013780 Glycosyl hydrolase, family 13, all-beta
IPR013781 Glycoside hydrolase, subgroup, catalytic core
IPR017853 Glycoside hydrolase, catalytic core
Graphical View of Protein Domain Structure
References
(Earliest) J:12977 Sick K et al., "Genetics of amylase isozymes in the mouse." Hereditas 1964;51():291-296
(Latest) J:139177 Hoffman BG et al., "Identification of transcripts with enriched expression in the developing and adult pancreas." Genome Biol 2008;9(6):R99
All references(78)
Other
accession IDs
MGD-MRK-1313, MGD-MRK-1315

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory