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Ncbp1 Gene Detail
 Symbol
Name
ID
Ncbp1
nuclear cap binding protein subunit 1
MGI:1891840

Nomenclature History
Genetic Map
Chromosome 4
21.5 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 2)

Sequence Map
Chr4:46151485-46185275 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Ncbp1 ± 2 cM)
Protein SuperFamily: nuclear cap-binding complex, CBP80 subunit
TreeFam: TF313400
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000006833 VEGA Gene Model | MGI Sequence Detail 33791 C57BL/6J ± Kb
transcript NM_001033201 RefSeq | MGI Sequence Detail 3167 C57BL/6
polypeptide Q3UYV9 UniProt | EBI | MGI Sequence Detail 790 Not Applicable
For the selected sequences
All sequences(29)
Alleles
and
phenotypes 		All alleles(12) : Gene trapped(12)
Polymorphisms SNPs within 2kb(162 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process gene silencing by RNA, mRNA capping...
Component cytoplasm, nucleus...
Function binding, protein binding...
External Resources: FuncBase
Expression cDNA source data(126)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(128) Genomic(2) cDNA(126)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000028330
DoTS DT.101735474, DT.534376, DT.94330518, DT.97384743
Consensus CDS Project CCDS18145.1
UniGene 389536
DFCI TC1578321, TC1631429
NIA Mouse Gene Index U004284
Entrez Gene 433702
VEGA Gene Model OTTMUSG00000006833
International Mouse Knockout Project Status Ncbp1
Protein
domains
InterPro ID Description
IPR003890 MIF4G-like, type 3
IPR015172 MIF4G-like, type 1
IPR015174 MIF4G-like, type 2
IPR016021 MIF4-like, type 1/2/3
IPR016024 Armadillo-type fold
Graphical View of Protein Domain Structure
References
(Earliest) J:34628 Chadwick BP et al., "Nuclear cap binding protein maps close to the xeroderma pigmentosum complementation group A (XPA) locus in human and mouse." Genomics 1996 1;35(3):632-3
(Latest) J:152729 Gruber JJ et al., "Ars2 links the nuclear cap-binding complex to RNA interference and cell proliferation." Cell 2009 Jul 23;138(2):328-39
All references(6)
Other
accession IDs 		MGI:2140419, MGI:2140583
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
Web browser compatibility 		The Jackson Laboratory