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Chd8 Gene Detail
 Symbol
Name
ID
Chd8
chromodomain helicase DNA binding protein 8
MGI:1915022


Nomenclature History
Synonyms 5830451P18Rik, Duplin, mKIAA1564
Genetic Map
Chromosome 14
Syntenic
 
Mapping data( 2)
Sequence Map
Chr14:52817826-52857466 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
TreeFam: TF313572
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000023392 VEGA Gene Model | MGI Sequence Detail 39641 C57BL/6J ± Kb
transcript NM_201637 RefSeq | MGI Sequence Detail 8190 -
polypeptide Q09XV5 UniProt | EBI | MGI Sequence Detail 2582 Not Applicable
For the selected sequences
All sequences(35)
Alleles
and
phenotypes
All alleles(10) : Targeted, knock-out(1) Gene trapped(9)
Homozygous null embryos are growth retarded starting at E5.5 and exhibit developmental arrest at E6.5. Mutants develop into an egg cylinder but do not form a primitive streak or mesoderm and exhibit increased apoptosis at E7.5.
Polymorphisms SNPs within 2kb(146 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (21 annotations)
Process chromatin assembly or disassembly, chromatin modification...
Component chromatin, nucleus...
Function ATP binding, chromatin binding...
External Resources: FuncBase
Expression Literature Summary: (3 records)
cDNA source data(11)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(14) Genomic(1) cDNA(13)
Microarray probesets(1)
Other database
links
Ensembl Gene Model ENSMUSG00000053754
DoTS DT.101165083, DT.527046, DT.91335432, DT.94211283, DT.94211287, DT.94211290, DT.94217030
Consensus CDS Project CCDS36919.1
DFCI TC1576225, TC1605081, TC1608917, TC1616466, TC1695742
NIA Mouse Gene Index U035535
Entrez Gene 67772
VEGA Gene Model OTTMUSG00000023392
International Mouse Knockout Project Status Chd8
Protein
domains
InterPro ID Description
IPR000330 SNF2-related
IPR000953 Chromo domain
IPR001650 DNA/RNA helicase, C-terminal
IPR006576 BRK domain
IPR014001 DEAD-like helicase, N-terminal
IPR014021 Helicase, superfamily 1/2, ATP-binding domain
IPR016197 Chromo domain-like
Graphical View of Protein Domain Structure
References
(Earliest) J:28401 Bettenhausen B et al., "Efficient isolation of novel mouse genes differentially expressed in early postimplantation embryos." Genomics 1995 Aug 10;28(3):436-41
(Latest) J:146960 Nishiyama M et al., "CHD8 suppresses p53-mediated apoptosis through histone H1 recruitment during early embryogenesis." Nat Cell Biol 2009 Feb;11(2):172-82
All references(11)
Other
accession IDs
MGI:2145721, MGI:3510543

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
02/06/2010
MGI_4.32
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The Jackson Laboratory