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Pcdh15 Gene Detail
 Symbol
Name
ID
Pcdh15
protocadherin 15
MGI:1891428


Nomenclature History
Synonyms Gm9815, nmf19, Ush1f
Genetic Map
Chromosome 10
40.2 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 12)

Sequence Map
Chr10:72562090-74112482 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Pcdh15 ± 2 cM)
TreeFam: TF326779
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000021142 VEGA Gene Model | MGI Sequence Detail 1550393 C57BL/6J ± Kb
transcript AF281899 GenBank | EMBL | DDBJ | MGI Sequence Detail 6975 -
polypeptide Q99PJ1 UniProt | EBI | MGI Sequence Detail 1943 Not Applicable
For the selected sequences
All sequences(24)
Alleles
and
phenotypes
All alleles(11) : Gene trapped(2) Transgenic(1) Spontaneous(6) Chemically induced(2)
Homozygotes for severe mutations exhibit circling, head-tossing, hyperactivity, impaired swimming and profound deafness. Mice have defects in cochlea and degeneration of hair cells, spiral ganglion cells and saccular macula. Females are poor mothers.
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (2)  
Polymorphisms RFLP(1) SNPs within 2kb(4716 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(43)
Process actin filament organization, adult locomotory behavior...
Component cytoplasm, integral to membrane...
Function calcium ion binding, protein binding...
This is a GO Consortium Reference Genome Project gene.
External Resources: MouseFunc
Expression Literature Summary: (2 records)
Data Summary: Assays (1)    Results (40)    Tissues (38)    Images (16)
Theiler Stages: 20,22,24,28
  Assay Type Assays   Results
      RNA in situ 1   40
cDNA source data(24)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(26) Genomic(1) cDNA(25)
Other database
links
Ensembl Gene Model ENSMUSG00000046980, ENSMUSG00000052613
DoTS DT.101215277, DT.101327250, DT.484475, DT.55139542, DT.91334909, DT.94178988
UniGene 338933
DFCI TC1595197, TC1667185
NIA Mouse Gene Index U011651
Entrez Gene 11994
VEGA Gene Model OTTMUSG00000021142
International Mouse Knockout Project Status Pcdh15
Protein
domains
InterPro ID Description
IPR002126 Cadherin
IPR015919 Cadherin-like
Graphical View of Protein Domain Structure
References
(Earliest) J:14990 Schaible RH, "av" Mouse News Lett 1957;15():29
(Latest) J:151359 Lelli A et al., "Tonotopic gradient in the developmental acquisition of sensory transduction in outer hair cells of the mouse cochlea." J Neurophysiol 2009 Jun;101(6):2961-73
All references(40)
Other
accession IDs
MGD-MRK-1480, MGI:2143894, MGI:2183461, MGI:3710651, MGI:88118

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory