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Cdh23 Gene Detail
 Symbol
Name
ID
Cdh23
cadherin 23 (otocadherin)
MGI:1890219


Nomenclature History
Synonyms 4930542A03Rik, ahl, bob, mdfw, nmf112, nmf181, nmf252, sals, USH1D
Genetic Map
Chromosome 10
30.3 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 44)

Sequence Map
Chr10:59765496-60159238 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Cdh23 ± 2 cM)
TreeFam: TF316403
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000017511 VEGA Gene Model | MGI Sequence Detail 393743 C57BL/6J ± Kb
transcript NM_023370 RefSeq | MGI Sequence Detail 10572 C57BL/6
polypeptide NP_075859 RefSeq | MGI Sequence Detail 3354 C57BL/6
For the selected sequences
All sequences(51)
Alleles
and
phenotypes
All alleles(19) : Spontaneous(12) Chemically induced(5) QTL(2)
Mutant mice exhibit circling behavior, tilting of the head and are deaf.
Associated Human Diseases (2)   Alleles Annotated to Human Diseases (4)  
Polymorphisms SNPs within 2kb(1354 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(41)
Process adult locomotory behavior, auditory receptor cell differentiation...
Component cilium, microtubule basal body...
Function calcium ion binding, protein binding...
This is a GO Consortium Reference Genome Project gene.
External Resources: MouseFunc
Expression Literature Summary: (6 records)
Data Summary: Assays (7)    Results (28)    Tissues (14)    Images (6)
Theiler Stages: 18,23,25,28
  Assay Type Assays   Results
      RT-PCR 6   26
      RNA in situ 1   2
cDNA source data(15)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(22) Genomic(3) cDNA(15) Primer pair(4)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000012819
DoTS DT.110590411, DT.110590545, DT.110590573, DT.110590659, DT.110590835, DT.110590871, DT.40164248, DT.55182731, DT.91333999, DT.91334000, DT.91398674, DT.97381184
UniGene 440327
DFCI TC1594862, TC1599463, TC1613099, TC1658923, TC1699250, TC1768923
NIA Mouse Gene Index U031830
Entrez Gene 22295
VEGA Gene Model OTTMUSG00000017511
International Mouse Knockout Project Status Cdh23
Protein
domains
InterPro ID Description
IPR002126 Cadherin
IPR015919 Cadherin-like
References
(Earliest) J:300 Snell GD, "Linkage of jittery and waltzing in the mouse" J Hered 1945;36():279-80
(Latest) J:147149 Schwander M et al., "A mouse model for nonsyndromic deafness (DFNB12) links hearing loss to defects in tip links of mechanosensory hair cells." Proc Natl Acad Sci U S A 2009 Mar 31;106(13):5252-7
All references(93)
Other
accession IDs
MGD-MRK-1223, MGD-MRK-15378, MGD-MRK-1608, MGD-MRK-1686, MGI:1202391, MGI:1914900, MGI:2663822, MGI:2680535, MGI:3032504, MGI:3708134, MGI:87972, MGI:88186, MGI:88219, MGI:98921

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory