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Lmx1a Gene Detail
 Symbol
Name
ID
Lmx1a
LIM homeobox transcription factor 1 alpha
MGI:1888519


Nomenclature History
Synonyms Lmx1.1, shaker short-tail, sst
Genetic Map
Chromosome 1
88.2 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 14)

Sequence Map
Chr1:169619370-169778872 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; dog, domestic; rat; hamster, golden    (Mammalian Orthology)
Comparative Map (Mouse/Human Lmx1a ± 2 cM)
Protein SuperFamily: transcription factor isl-1
TreeFam: TF315442
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000020906 VEGA Gene Model | MGI Sequence Detail 159503 C57BL/6J ± Kb
transcript NM_033652 RefSeq | MGI Sequence Detail 3338 C57BL/6
polypeptide Q9JKU8 UniProt | EBI | MGI Sequence Detail 382 Not Applicable
For the selected sequences
All sequences(15)
Alleles
and
phenotypes
All alleles(13) : Spontaneous(13)
Mutations in the dreher locus produce neurological and skeletal abnormalities, inner ear defects, and belly spotting. Deafness and hypoplasia of Mullerian duct derivatives are also reported for some alleles.
Polymorphisms SNPs within 2kb(890 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(25)
Process axon guidance, central nervous system development...
Component nucleus
Function DNA binding, metal ion binding...
External Resources: MouseFunc
Expression Literature Summary: (44 records)
Data Summary: Assays (7)    Results (66)    Tissues (55)    Images (12)
Theiler Stages: 2,3,4,5,16,17,19,20,21,28
  Assay Type Assays   Results
      RT-PCR 1   15
      RNA in situ 5   47
      Immunohistochemistry 1   4
cDNA source data(8)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Molecular
reagents
All nucleic(15) Genomic(3) cDNA(8) Primer pair(1) Other(3) Antibodies(1)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000026686
DoTS DT.97407478
UniGene 330081
DFCI TC1587228
NIA Mouse Gene Index U001059
Entrez Gene 110648
VEGA Gene Model OTTMUSG00000020906
International Mouse Knockout Project Status Lmx1a
Protein
domains
InterPro ID Description
IPR001356 Homeobox
IPR001781 Zinc finger, LIM-type
IPR009057 Homeodomain-like
IPR012287 Homeodomain-related
IPR017970 Homeobox, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:15346 FALCONER DS et al., "[Dreher, a new gene of the waltzer-shaker group in the house mouse.]" Z Indukt Abstamm Vererbungsl 1951;84(2):71-3
(Latest) J:152851 Huang X et al., "Sonic hedgehog signaling regulates a novel epithelial progenitor domain of the hindbrain choroid plexus." Development 2009 Aug;136(15):2535-43
All references(70)
Other
accession IDs
MGD-MRK-14613, MGD-MRK-8891, MGI:94923

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory