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Neurod1 Gene Detail
 Symbol
Name
ID
Neurod1
neurogenic differentiation 1
MGI:1339708


Nomenclature History
Synonyms BETA2, BHF-1, bHLHa3, Neurod
Genetic Map
Chromosome 2
46.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 4)

Sequence Map
Chr2:79292678-79296908 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; hamster, Chinese; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Neurod1 ± 2 cM)
Protein SuperFamily: basic helix-loop-helix transcription factor NeuroD
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000013310 VEGA Gene Model | MGI Sequence Detail 4231 C57BL/6J ± Kb
transcript NM_010894 RefSeq | MGI Sequence Detail 2494 C57BL/6
polypeptide Q60867 UniProt | EBI | MGI Sequence Detail 357 Not Applicable
For the selected sequences
All sequences(21)
Alleles
and
phenotypes
All alleles(4) : Targeted, knock-out(1) Targeted, other(3)
Homozygotes for targeted null mutations exhibit neonatal diabetes, pancreatic enteroendocrine cell deficits, impaired hearing and balance, retinal degeneration, and seizures. Survival past birth is dependent on genetic background.
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (1)  
Polymorphisms RFLP(1) SNPs within 2kb(20 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(29)
Process anterior/posterior pattern formation, camera-type eye development...
Component cytoplasm, intracellular part...
Function DNA binding, protein binding...
External Resources: MouseFunc
Expression Literature Summary: (173 records)
Data Summary: Assays (39)    Results (346)    Tissues (234)    Images (94)
Theiler Stages: 2,3,4,5,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,28
  Assay Type Assays   Results
      Western blot 2   2
      RT-PCR 8   35
      RNA in situ 23   253
      Immunohistochemistry 4   17
      Northern blot 2   39
cDNA source data(42)
External Resources: Allen Brain Atlas  GENSAT  GEO 
Molecular
reagents
All nucleic(65) Genomic(1) cDNA(46) Primer pair(10) Other(8) Antibodies(3)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000034701
UniGene 4636
PDB 2QL2
DFCI TC1579116, TC1595669
NIA Mouse Gene Index U022794
Entrez Gene 18012
VEGA Gene Model OTTMUSG00000013310
International Mouse Knockout Project Status Neurod1
Protein
domains
InterPro ID Description
IPR001092 Helix-loop-helix DNA-binding domain
IPR011598 Helix-loop-helix DNA-binding
IPR016637 Transcription factor, basic helix-loop-helix, NeuroD
Graphical View of Protein Domain Structure
References
(Earliest) J:25296 Lee JE et al., "Conversion of Xenopus ectoderm into neurons by NeuroD, a basic helix-loop-helix protein." Science 1995 May 12;268(5212):836-44
(Latest) J:153561 Dominguez-Frutos E et al., "Tissue-specific requirements for FGF8 during early inner ear development." Mech Dev 2009 Oct;126(10):873-81
All references(204)
Other
accession IDs
MGD-MRK-26011, MGI:104577

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory