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Tcf7l1 Gene Detail
 Symbol
Name
ID
Tcf7l1
transcription factor 7-like 1 (T-cell specific, HMG box)
MGI:1202876


Nomenclature History
Synonyms Tcf3
Genetic Map
Chromosome 6
30.4 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 2)

Sequence Map
Chr6:72576372-72739248 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Tcf7l1 ± 2 cM)
TreeFam: TF318448
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000021200 VEGA Gene Model | MGI Sequence Detail 162877 C57BL/6J ± Kb
transcript NM_001079822 RefSeq | MGI Sequence Detail 2784 C57BL/6
polypeptide Q9Z1J1 UniProt | EBI | MGI Sequence Detail 584 Not Applicable
For the selected sequences
All sequences(21)
Alleles
and
phenotypes
All alleles(106) : Targeted, knock-out(1) Targeted, other(1) Gene trapped(104)
Homozygous mice display embryonic lethality and partial or complete anterior-posterior axis structure duplications including the notochord, primitive streak, and neural-folds. Anterior neural structures are absent and abnormalities are seen in the caudal portions of the brain, heart and foregut.
Polymorphisms SNPs within 2kb(827 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(12)
Process axial mesoderm morphogenesis, determination of anterior/posterior axis, embryo...
Component nucleus
Function beta-catenin binding, DNA binding...
This is a GO Consortium Reference Genome Project gene.
External Resources: MouseFunc
Expression Literature Summary: (28 records)
Data Summary: Assays (8)    Results (159)    Tissues (155)    Images (24)
Theiler Stages: 2,3,4,5,17,18,19,20,21,22,24,28
  Assay Type Assays   Results
      RT-PCR 2   18
      RNA in situ 6   141
cDNA source data(45)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(48) cDNA(45) Primer pair(3)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000055799
DoTS DT.485681
UniGene 440067
DFCI TC1584027
NIA Mouse Gene Index U027481
Entrez Gene 21415
VEGA Gene Model OTTMUSG00000021200
International Mouse Knockout Project Status Tcf7l1
Protein
domains
InterPro ID Description
IPR000910 High mobility group, HMG1/HMG2
IPR009071 High mobility group, superfamily
IPR013558 CTNNB1 binding, N-teminal
Graphical View of Protein Domain Structure
References
(Earliest) J:45934 Korinek V et al., "Two members of the Tcf family implicated in Wnt/beta-catenin signaling during embryogenesis in the mouse." Mol Cell Biol 1998 Mar;18(3):1248-56
(Latest) J:152838 Fu H et al., "A genome-wide screen for spatially restricted expression patterns identifies transcription factors that regulate glial development." J Neurosci 2009 Sep 9;29(36):11399-408
All references(38)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory