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Nfkb2 Gene Detail
 Symbol
Name
ID
Nfkb2
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100
MGI:1099800


Nomenclature History
Synonyms NF kappaB2, p52
Genetic Map
Chromosome 19
45.75 cM, cytoband C3-D2
Detailed Genetic Map ± 1 cM
 
Mapping data( 7)

Sequence Map
Chr19:46380108-46386580 bp, + strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Nfkb2 ± 2 cM)
Protein SuperFamily: transcription factor NF-kappa-B2
TreeFam: TF325632
Sequences
Representative Sequences Length Strain/Species Flank
genomic 18034 NCBI Gene Model | MGI Sequence Detail 6473 C57BL/6J ± Kb
transcript NM_019408 RefSeq | MGI Sequence Detail 3169 C57BL/6
polypeptide Q9WTK5 UniProt | EBI | MGI Sequence Detail 899 Not Applicable
For the selected sequences
All sequences(42)
Alleles
and
phenotypes
All alleles(7) : Targeted, knock-out(5) Chemically induced(2)
Homozygotes for targeted null mutations exhibit gastric hyperplasia, enlarged lymph nodes, enhanced cytokine production by activated T cells, absence of Peyer's patches, increased susceptibility to Leishmania major, and early postnatal mortality.
Polymorphisms PCR(1) SNPs within 2kb(27 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (15 annotations)
Process extracellular matrix organization, follicular dendritic cell differentiation...
Component cytoplasm, nucleus...
Function DNA binding, protein binding...
External Resources: FuncBase
Expression Literature Summary: (9 records)
Data Summary: Assays (3)    Results (32)    Tissues (30)    Images (2)
Theiler Stages: 2,3,4,5,17,18,21,28
  Assay Type Assays   Results
      RT-PCR 1   15
      RNA in situ 2   17
cDNA source data(70)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(85) Genomic(12) cDNA(70) Primer pair(2) Other(1)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000025225
Consensus CDS Project CCDS29874.1
UniGene 102365
DFCI TC1575937, TC1629655, TC1756167
NIA Mouse Gene Index U019521
Entrez Gene 18034
International Mouse Knockout Project Status Nfkb2
Protein
domains
InterPro ID Description
IPR000451 NF-kappa-B/Rel/dorsal
IPR000488 Death
IPR002110 Ankyrin repeat
IPR002909 Cell surface receptor IPT/TIG
IPR008967 p53-like transcription factor, DNA-binding
IPR011029 DEATH-like
IPR011539 Rel homology
IPR013783 Immunoglobulin-like fold
IPR014756 Immunoglobulin E-set
IPR015682 Nuclear factor kappaB related2
IPR020683 Ankyrin repeat-containing domain
Graphical View of Protein Domain Structure
References
(Earliest) J:54118 Verma IM et al., "Rel/NF-kappa B/I kappa B family: intimate tales of association and dissociation." Genes Dev 1995 Nov 15;9(22):2723-35
(Latest) J:154633 Yao Z et al., "NF-kappaB p100 limits TNF-induced bone resorption in mice by a TRAF3-dependent mechanism." J Clin Invest 2009 Oct;119(10):3024-34
All references(81)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
02/06/2010
MGI_4.32
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The Jackson Laboratory