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Cpt2 Gene Detail
 Symbol
Name
ID
Cpt2
carnitine palmitoyltransferase 2
MGI:109176

Nomenclature History
Synonyms CPT II, CPTII
Genetic Map
Chromosome 4
54.4 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 5)

Sequence Map
Chr4:107576586-107596215 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Cpt2 ± 2 cM)
Protein SuperFamily: carnitine O-acetyltransferase
TreeFam: TF315202
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000009301 VEGA Gene Model | MGI Sequence Detail 19630 C57BL/6J ± Kb
transcript NM_009949 RefSeq | MGI Sequence Detail 2366 C57BL/6
polypeptide P52825 UniProt | EBI | MGI Sequence Detail 658 Not Applicable
For the selected sequences
All sequences(32)
Alleles
and
phenotypes 		All alleles(2) : Targeted, other(2)
Polymorphisms RFLP(1) SNPs within 2kb(87 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process fatty acid metabolic process, lipid metabolic process...
Component membrane, mitochondrial inner membrane...
Function acyltransferase activity, carnitine O-palmitoyltransferase activity...
External Resources: FuncBase
Expression Literature Summary: (4 records)
Data Summary: Assays (2)    Results (107)    Tissues (105)    Images (14)
Theiler Stages: 1,2,3,4,5,22,28
  Assay Type Assays   Results
      RT-PCR 1   13
      RNA in situ 1   94
cDNA source data(97)
External Resources: Allen Brain Atlas  GENSAT  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(104) Genomic(4) cDNA(97) Primer pair(3)
Microarray probesets(2)
Other database
links
EC 2.3.1.21
Ensembl Gene Model ENSMUSG00000028607
DoTS DT.101226832, DT.94304264
Consensus CDS Project CCDS18443.1
UniGene 307620
DFCI TC1574910
NIA Mouse Gene Index U025349
Entrez Gene 12896
VEGA Gene Model OTTMUSG00000009301
International Mouse Knockout Project Status Cpt2
Protein
domains
InterPro ID Description
IPR000542 Acyltransferase ChoActase/COT/CPT
Graphical View of Protein Domain Structure
References
(Earliest) J:16140 Gelb BD, "Genomic structure of and a cardiac promoter for the mouse carnitine palmitoyltransferase II gene." Genomics 1993 Dec;18(3):651-5
(Latest) J:151002 Pagliarini DJ et al., "A mitochondrial protein compendium elucidates complex I disease biology." Cell 2008 Jul 11;134(1):112-23
All references(18)
Other
accession IDs 		MGD-MRK-38220, MGI:2140234
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
Web browser compatibility 		The Jackson Laboratory