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Cacna1e Gene Detail
 Symbol
Name
ID
Cacna1e
calcium channel, voltage-dependent, R type, alpha 1E subunit
MGI:106217


Nomenclature History
Synonyms alpha1E, Cav2.3, Cchra1
Genetic Map
Chromosome 1
86.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 9)

Sequence Map
Chr1:156239649-156573049 bp, - strand
(From Ensembl annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Cacna1e ± 2 cM)
Protein SuperFamily: voltage-gated calcium channel
TreeFam: TF312805
Sequences
Representative Sequences Length Strain/Species Flank
genomic ENSMUSG00000004110 Ensembl Gene Model | MGI Sequence Detail 333401 C57BL/6J ± Kb
transcript NM_009782 RefSeq | MGI Sequence Detail 12697 -
polypeptide Q61290 UniProt | EBI | MGI Sequence Detail 2272 Not Applicable
For the selected sequences
All sequences(25)
Alleles
and
phenotypes
All alleles(7) : Targeted, knock-out(3) Targeted, other(3) Gene trapped(1)
Homozygotes for targeted null mutations exhibit altered R-type Ca2+ channels, increased timidity and body weight, impaired glucose tolerance, reduced locomotor activity, and lack of the cocaine stimulation of locomotor response.
Polymorphisms All PCR and RFLP(3) : PCR(1) RFLP(2) SNPs within 2kb(1855 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (18 annotations)
Process calcium ion transport, glucose homeostasis...
Component integral to membrane, membrane...
Function calcium channel activity, calcium ion binding...
External Resources: FuncBase
Expression Literature Summary: (4 records)
Data Summary: Assays (2)    Results (6)    Tissues (5)
Theiler Stages: 15,20,23,25,28
  Assay Type Assays   Results
      RT-PCR 2   6
cDNA source data(18)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(24) Genomic(2) cDNA(19) Primer pair(3)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000004110
DoTS DT.101347596, DT.40183817, DT.55193756, DT.91561091, DT.94169905
UniGene 267517
DFCI TC1596799, TC1618669, TC1619737, TC1621723
NIA Mouse Gene Index U021910
Entrez Gene 12290
International Mouse Knockout Project Status Cacna1e
Protein
domains
InterPro ID Description
IPR002077 Voltage-dependent calcium channel, alpha-1 subunit
IPR005449 Voltage-dependent calcium channel, R-type, alpha-1 subunit
IPR005821 Ion transport
IPR014873 Voltage-dependent calcium channel, alpha-1 subunit, IQ domain
IPR018249 EF-HAND 2
Graphical View of Protein Domain Structure
References
(Earliest) J:19970 Williams ME et al., "Structure and functional characterization of neuronal alpha 1E calcium channel subtypes." J Biol Chem 1994 Sep 2;269(35):22347-57
(Latest) J:151465 Hildebrand ME et al., "Functional coupling between mGluR1 and Cav3.1 T-type calcium channels contributes to parallel fiber-induced fast calcium signaling within Purkinje cell dendritic spines." J Neurosci 2009 Aug 5;29(31):9668-82
All references(39)
Other
accession IDs
MGD-MRK-33909

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
02/06/2010
MGI_4.32
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The Jackson Laboratory