About   Help   FAQ
Rora Gene Detail
 Symbol
Name
ID
Rora
RAR-related orphan receptor alpha
MGI:104661


Nomenclature History
Synonyms 9530021D13Rik, Nr1f1
Genetic Map
Chromosome 9
36.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 24)

Sequence Map
Chr9:68501593-69236053 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Rora ± 2 cM)
TreeFam: TF316558
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000023055 VEGA Gene Model | MGI Sequence Detail 734461 C57BL/6J ± Kb
transcript NM_013646 RefSeq | MGI Sequence Detail 1657 C57BL/6
polypeptide P51448 UniProt | EBI | MGI Sequence Detail 523 Not Applicable
For the selected sequences
All sequences(35)
Alleles
and
phenotypes
All alleles(6) : Targeted, knock-out(1) Targeted, other(2) Gene trapped(1) Spontaneous(1) Chemically induced(1)
Homozygotes for null mutations exhibit ataxia, cerebellar dysgenesis, impaired Purkinje and granule cell development, olfactory defects, hypoalphalipoproteinemia, and death around 4 weeks. Heterozygotes show slow Purkinje cell dedritic atrophy and loss.
Polymorphisms RFLP(1) SNPs within 2kb(4503 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(23)
Process cerebellar Purkinje cell differentiation, cGMP metabolic process...
Component nucleus
Function DNA binding, ligand-dependent nuclear receptor activity...
External Resources: MouseFunc
Expression Literature Summary: (28 records)
Data Summary: Assays (13)    Results (295)    Tissues (189)    Images (28)
Theiler Stages: 2,3,4,5,17,18,21,22,23,25,28
  Assay Type Assays   Results
      RT-PCR 3   62
      RNA in situ 8   222
      Northern blot 2   11
cDNA source data(26)
External Resources: GENSAT  GEO 
Molecular
reagents
All nucleic(43) Genomic(11) cDNA(26) Primer pair(4) Other(2)
Microarray probesets(4)
Other database
links
Ensembl Gene Model ENSMUSG00000032238
DoTS DT.40134876, DT.486288, DT.99850366
DFCI TC1577083, TC1586960, TC1592080, TC1681027
NIA Mouse Gene Index U043000, U094151
Entrez Gene 19883
VEGA Gene Model OTTMUSG00000023055
International Mouse Knockout Project Status Rora
Protein
domains
InterPro ID Description
IPR000536 Nuclear hormone receptor, ligand-binding, core
IPR001628 Zinc finger, nuclear hormone receptor-type
IPR001723 Steroid hormone receptor
IPR003079 Nuclear receptor ROR
IPR008946 Nuclear hormone receptor, ligand-binding
IPR013088 Zinc finger, NHR/GATA-type
Graphical View of Protein Domain Structure
References
(Earliest) J:13140 SIDMAN RL et al., "Staggerer, a new mutation in the mouse affecting the cerebellum." Science 1962 Aug 24;137():610-2
(Latest) J:152678 Maricich SM et al., "Atoh1-lineal neurons are required for hearing and for the survival of neurons in the spiral ganglion and brainstem accessory auditory nuclei." J Neurosci 2009 Sep 9;29(36):11123-33
All references(168)
Other
accession IDs
MGD-MRK-14383, MGD-MRK-26101, MGI:2442931, MGI:3054678

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/20/2009
MGI_4.31
Web browser compatibility
The Jackson Laboratory