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Pdx1 Gene Detail
 Symbol
Name
ID
Pdx1
pancreatic and duodenal homeobox 1
MGI:102851


Nomenclature History
Synonyms IDX-1, IPF-1, Ipf1, Mody4, pdx-1, STF-1
Genetic Map
Chromosome 5
82.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 10)

Sequence Map
Chr5:148081702-148087423 bp, + strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Pdx1 ± 2 cM)
TreeFam: TF326223
Sequences
Representative Sequences Length Strain/Species Flank
genomic 18609 NCBI Gene Model | MGI Sequence Detail 5722 C57BL/6J ± Kb
transcript NM_008814 RefSeq | MGI Sequence Detail 1287 -
polypeptide P52946 UniProt | EBI | MGI Sequence Detail 284 Not Applicable
For the selected sequences
All sequences(16)
Alleles
and
phenotypes
All alleles(10) : Targeted, knock-out(3) Targeted, other(6) Gene trapped(1)
Mice homozygous for a knock-out allele exhibit postnatal lethality, abnormal pancreatic and liver development, and increased plasma glucose levels. Mice heterozygous for a knock-out allele exhibit abnormal pancreatic development and abnormal glucose homeostasis.
Associated Human Diseases (4)   Alleles Annotated to Human Diseases (3)  
Polymorphisms All PCR and RFLP(2) : PCR(1) RFLP(1) SNPs within 2kb(2 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(29)
Process cell differentiation, endocrine pancreas development...
Component intracellular part, nucleus...
Function DNA binding, protein binding...
External Resources: MouseFunc
Expression Literature Summary: (178 records)
Data Summary: Assays (37)    Results (366)    Tissues (104)    Images (74)
Theiler Stages: 11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,28
  Assay Type Assays   Results
      RT-PCR 15   272
      RNA in situ 5   18
      Immunohistochemistry 15   67
      Northern blot 2   9
cDNA source data(8)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(26) Genomic(1) cDNA(10) Primer pair(11) Other(4) Antibodies(8)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000029644
DoTS DT.40146522
UniGene 389714
DFCI TC1588916
Entrez Gene 18609
International Mouse Knockout Project Status Pdx1
Protein
domains
InterPro ID Description
IPR001356 Homeobox
IPR001827 Homeobox protein, antennapedia type, conserved site
IPR012287 Homeodomain-related
IPR017970 Homeobox, conserved site
IPR017995 Homeobox protein, antennapedia type
IPR020479 Homeobox, region
Graphical View of Protein Domain Structure
References
(Earliest) J:15273 Ohlsson H et al., "IPF1, a homeodomain-containing transactivator of the insulin gene." EMBO J 1993 Nov;12(11):4251-9
(Latest) J:152922 Golson ML et al., "Jagged1 is a competitive inhibitor of Notch signaling in the embryonic pancreas." Mech Dev 2009 Aug-Sep;126(8-9):687-99
All references(249)
Other
accession IDs
MGD-MRK-11442, MGD-MRK-23684

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory