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Gene Ontology Browser
Term Detail
GO term:pseudouridine synthesis
Synonym: pseudouridylation
GO id:GO:0001522
Definition:The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
Number of paths to term: 14

is-adenotes an 'is-a' relationship
part-ofdenotes a 'part-of' relationship
regulatesdenotes a 'regulates' relationship
positively-regulatesdenotes a 'positively-regulates' relationship
negatively-regulatesdenotes a 'negatively-regulates' relationship


Gene_Ontology
        is-abiological_process
                is-acellular process
                        is-acellular metabolic process
                                is-acellular aromatic compound metabolic process
                                        is-anucleobase-containing compound metabolic process
                                                is-anucleic acid metabolic process
                                                        is-aRNA metabolic process
                                                                is-aRNA modification
                                                                        is-abase conversion or substitution editing +
                                                                        is-achloroplast RNA modification +
                                                                        is-amitochondrial RNA modification +
                                                                        is-amRNA modification +
                                                                        is-aoxidative RNA demethylation +
                                                                        is-apseudouridine synthesis [GO:0001522] (15 genes, 17 annotations)
                                                                                is-amRNA pseudouridine synthesis
                                                                                is-arRNA pseudouridine synthesis +
                                                                                is-asnRNA pseudouridine synthesis
                                                                                is-atRNA pseudouridine synthesis +
                                                                        is-aRNA methylation +
                                                                        is-aRNA nucleotide deletion +
                                                                        is-aRNA nucleotide insertion +
                                                                        is-arRNA modification +
                                                                        is-asnRNA modification +
                                                                        is-atRNA modification +
                                                                        is-aviral RNA editing


Gene_Ontology
        is-abiological_process
                is-acellular process
                        is-acellular metabolic process
                                is-acellular macromolecule metabolic process
                                        is-aRNA metabolic process
                                                is-aRNA modification
                                                        is-abase conversion or substitution editing +
                                                        is-achloroplast RNA modification +
                                                        is-amitochondrial RNA modification +
                                                        is-amRNA modification +
                                                        is-aoxidative RNA demethylation +
                                                        is-apseudouridine synthesis [GO:0001522] (15 genes, 17 annotations)
                                                                is-amRNA pseudouridine synthesis
                                                                is-arRNA pseudouridine synthesis +
                                                                is-asnRNA pseudouridine synthesis
                                                                is-atRNA pseudouridine synthesis +
                                                        is-aRNA methylation +
                                                        is-aRNA nucleotide deletion +
                                                        is-aRNA nucleotide insertion +
                                                        is-arRNA modification +
                                                        is-asnRNA modification +
                                                        is-atRNA modification +
                                                        is-aviral RNA editing


Gene_Ontology
        is-abiological_process
                is-acellular process
                        is-acellular metabolic process
                                is-acellular nitrogen compound metabolic process
                                        is-anucleobase-containing compound metabolic process
                                                is-anucleic acid metabolic process
                                                        is-aRNA metabolic process
                                                                is-aRNA modification
                                                                        is-abase conversion or substitution editing +
                                                                        is-achloroplast RNA modification +
                                                                        is-amitochondrial RNA modification +
                                                                        is-amRNA modification +
                                                                        is-aoxidative RNA demethylation +
                                                                        is-apseudouridine synthesis [GO:0001522] (15 genes, 17 annotations)
                                                                                is-amRNA pseudouridine synthesis
                                                                                is-arRNA pseudouridine synthesis +
                                                                                is-asnRNA pseudouridine synthesis
                                                                                is-atRNA pseudouridine synthesis +
                                                                        is-aRNA methylation +
                                                                        is-aRNA nucleotide deletion +
                                                                        is-aRNA nucleotide insertion +
                                                                        is-arRNA modification +
                                                                        is-asnRNA modification +
                                                                        is-atRNA modification +
                                                                        is-aviral RNA editing


Gene_Ontology
        is-abiological_process
                is-acellular process
                        is-acellular metabolic process
                                is-aheterocycle metabolic process
                                        is-anucleobase-containing compound metabolic process
                                                is-anucleic acid metabolic process
                                                        is-aRNA metabolic process
                                                                is-aRNA modification
                                                                        is-abase conversion or substitution editing +
                                                                        is-achloroplast RNA modification +
                                                                        is-amitochondrial RNA modification +
                                                                        is-amRNA modification +
                                                                        is-aoxidative RNA demethylation +
                                                                        is-apseudouridine synthesis [GO:0001522] (15 genes, 17 annotations)
                                                                                is-amRNA pseudouridine synthesis
                                                                                is-arRNA pseudouridine synthesis +
                                                                                is-asnRNA pseudouridine synthesis
                                                                                is-atRNA pseudouridine synthesis +
                                                                        is-aRNA methylation +
                                                                        is-aRNA nucleotide deletion +
                                                                        is-aRNA nucleotide insertion +
                                                                        is-arRNA modification +
                                                                        is-asnRNA modification +
                                                                        is-atRNA modification +
                                                                        is-aviral RNA editing


Gene_Ontology
        is-abiological_process
                is-ametabolic process
                        is-acellular metabolic process
                                is-acellular aromatic compound metabolic process
                                        is-anucleobase-containing compound metabolic process
                                                is-anucleic acid metabolic process
                                                        is-aRNA metabolic process
                                                                is-aRNA modification
                                                                        is-abase conversion or substitution editing +
                                                                        is-achloroplast RNA modification +
                                                                        is-amitochondrial RNA modification +
                                                                        is-amRNA modification +
                                                                        is-aoxidative RNA demethylation +
                                                                        is-apseudouridine synthesis [GO:0001522] (15 genes, 17 annotations)
                                                                                is-amRNA pseudouridine synthesis
                                                                                is-arRNA pseudouridine synthesis +
                                                                                is-asnRNA pseudouridine synthesis
                                                                                is-atRNA pseudouridine synthesis +
                                                                        is-aRNA methylation +
                                                                        is-aRNA nucleotide deletion +
                                                                        is-aRNA nucleotide insertion +
                                                                        is-arRNA modification +
                                                                        is-asnRNA modification +
                                                                        is-atRNA modification +
                                                                        is-aviral RNA editing


Gene_Ontology
        is-abiological_process
                is-ametabolic process
                        is-acellular metabolic process
                                is-acellular macromolecule metabolic process
                                        is-aRNA metabolic process
                                                is-aRNA modification
                                                        is-abase conversion or substitution editing +
                                                        is-achloroplast RNA modification +
                                                        is-amitochondrial RNA modification +
                                                        is-amRNA modification +
                                                        is-aoxidative RNA demethylation +
                                                        is-apseudouridine synthesis [GO:0001522] (15 genes, 17 annotations)
                                                                is-amRNA pseudouridine synthesis
                                                                is-arRNA pseudouridine synthesis +
                                                                is-asnRNA pseudouridine synthesis
                                                                is-atRNA pseudouridine synthesis +
                                                        is-aRNA methylation +
                                                        is-aRNA nucleotide deletion +
                                                        is-aRNA nucleotide insertion +
                                                        is-arRNA modification +
                                                        is-asnRNA modification +
                                                        is-atRNA modification +
                                                        is-aviral RNA editing


Gene_Ontology
        is-abiological_process
                is-ametabolic process
                        is-acellular metabolic process
                                is-acellular nitrogen compound metabolic process
                                        is-anucleobase-containing compound metabolic process
                                                is-anucleic acid metabolic process
                                                        is-aRNA metabolic process
                                                                is-aRNA modification
                                                                        is-abase conversion or substitution editing +
                                                                        is-achloroplast RNA modification +
                                                                        is-amitochondrial RNA modification +
                                                                        is-amRNA modification +
                                                                        is-aoxidative RNA demethylation +
                                                                        is-apseudouridine synthesis [GO:0001522] (15 genes, 17 annotations)
                                                                                is-amRNA pseudouridine synthesis
                                                                                is-arRNA pseudouridine synthesis +
                                                                                is-asnRNA pseudouridine synthesis
                                                                                is-atRNA pseudouridine synthesis +
                                                                        is-aRNA methylation +
                                                                        is-aRNA nucleotide deletion +
                                                                        is-aRNA nucleotide insertion +
                                                                        is-arRNA modification +
                                                                        is-asnRNA modification +
                                                                        is-atRNA modification +
                                                                        is-aviral RNA editing


Gene_Ontology
        is-abiological_process
                is-ametabolic process
                        is-acellular metabolic process
                                is-aheterocycle metabolic process
                                        is-anucleobase-containing compound metabolic process
                                                is-anucleic acid metabolic process
                                                        is-aRNA metabolic process
                                                                is-aRNA modification
                                                                        is-abase conversion or substitution editing +
                                                                        is-achloroplast RNA modification +
                                                                        is-amitochondrial RNA modification +
                                                                        is-amRNA modification +
                                                                        is-aoxidative RNA demethylation +
                                                                        is-apseudouridine synthesis [GO:0001522] (15 genes, 17 annotations)
                                                                                is-amRNA pseudouridine synthesis
                                                                                is-arRNA pseudouridine synthesis +
                                                                                is-asnRNA pseudouridine synthesis
                                                                                is-atRNA pseudouridine synthesis +
                                                                        is-aRNA methylation +
                                                                        is-aRNA nucleotide deletion +
                                                                        is-aRNA nucleotide insertion +
                                                                        is-arRNA modification +
                                                                        is-asnRNA modification +
                                                                        is-atRNA modification +
                                                                        is-aviral RNA editing


Gene_Ontology
        is-abiological_process
                is-ametabolic process
                        is-anitrogen compound metabolic process
                                is-acellular nitrogen compound metabolic process
                                        is-anucleobase-containing compound metabolic process
                                                is-anucleic acid metabolic process
                                                        is-aRNA metabolic process
                                                                is-aRNA modification
                                                                        is-abase conversion or substitution editing +
                                                                        is-achloroplast RNA modification +
                                                                        is-amitochondrial RNA modification +
                                                                        is-amRNA modification +
                                                                        is-aoxidative RNA demethylation +
                                                                        is-apseudouridine synthesis [GO:0001522] (15 genes, 17 annotations)
                                                                                is-amRNA pseudouridine synthesis
                                                                                is-arRNA pseudouridine synthesis +
                                                                                is-asnRNA pseudouridine synthesis
                                                                                is-atRNA pseudouridine synthesis +
                                                                        is-aRNA methylation +
                                                                        is-aRNA nucleotide deletion +
                                                                        is-aRNA nucleotide insertion +
                                                                        is-arRNA modification +
                                                                        is-asnRNA modification +
                                                                        is-atRNA modification +
                                                                        is-aviral RNA editing


Gene_Ontology
        is-abiological_process
                is-ametabolic process
                        is-aorganic substance metabolic process
                                is-amacromolecule metabolic process
                                        is-acellular macromolecule metabolic process
                                                is-aRNA metabolic process
                                                        is-aRNA modification
                                                                is-abase conversion or substitution editing +
                                                                is-achloroplast RNA modification +
                                                                is-amitochondrial RNA modification +
                                                                is-amRNA modification +
                                                                is-aoxidative RNA demethylation +
                                                                is-apseudouridine synthesis [GO:0001522] (15 genes, 17 annotations)
                                                                        is-amRNA pseudouridine synthesis
                                                                        is-arRNA pseudouridine synthesis +
                                                                        is-asnRNA pseudouridine synthesis
                                                                        is-atRNA pseudouridine synthesis +
                                                                is-aRNA methylation +
                                                                is-aRNA nucleotide deletion +
                                                                is-aRNA nucleotide insertion +
                                                                is-arRNA modification +
                                                                is-asnRNA modification +
                                                                is-atRNA modification +
                                                                is-aviral RNA editing


Gene_Ontology
        is-abiological_process
                is-ametabolic process
                        is-aorganic substance metabolic process
                                is-amacromolecule metabolic process
                                        is-amacromolecule modification
                                                is-aRNA modification
                                                        is-abase conversion or substitution editing +
                                                        is-achloroplast RNA modification +
                                                        is-amitochondrial RNA modification +
                                                        is-amRNA modification +
                                                        is-aoxidative RNA demethylation +
                                                        is-apseudouridine synthesis [GO:0001522] (15 genes, 17 annotations)
                                                                is-amRNA pseudouridine synthesis
                                                                is-arRNA pseudouridine synthesis +
                                                                is-asnRNA pseudouridine synthesis
                                                                is-atRNA pseudouridine synthesis +
                                                        is-aRNA methylation +
                                                        is-aRNA nucleotide deletion +
                                                        is-aRNA nucleotide insertion +
                                                        is-arRNA modification +
                                                        is-asnRNA modification +
                                                        is-atRNA modification +
                                                        is-aviral RNA editing


Gene_Ontology
        is-abiological_process
                is-ametabolic process
                        is-aorganic substance metabolic process
                                is-amacromolecule metabolic process
                                        is-anucleic acid metabolic process
                                                is-aRNA metabolic process
                                                        is-aRNA modification
                                                                is-abase conversion or substitution editing +
                                                                is-achloroplast RNA modification +
                                                                is-amitochondrial RNA modification +
                                                                is-amRNA modification +
                                                                is-aoxidative RNA demethylation +
                                                                is-apseudouridine synthesis [GO:0001522] (15 genes, 17 annotations)
                                                                        is-amRNA pseudouridine synthesis
                                                                        is-arRNA pseudouridine synthesis +
                                                                        is-asnRNA pseudouridine synthesis
                                                                        is-atRNA pseudouridine synthesis +
                                                                is-aRNA methylation +
                                                                is-aRNA nucleotide deletion +
                                                                is-aRNA nucleotide insertion +
                                                                is-arRNA modification +
                                                                is-asnRNA modification +
                                                                is-atRNA modification +
                                                                is-aviral RNA editing


Gene_Ontology
        is-abiological_process
                is-ametabolic process
                        is-aorganic substance metabolic process
                                is-aorganic cyclic compound metabolic process
                                        is-anucleobase-containing compound metabolic process
                                                is-anucleic acid metabolic process
                                                        is-aRNA metabolic process
                                                                is-aRNA modification
                                                                        is-abase conversion or substitution editing +
                                                                        is-achloroplast RNA modification +
                                                                        is-amitochondrial RNA modification +
                                                                        is-amRNA modification +
                                                                        is-aoxidative RNA demethylation +
                                                                        is-apseudouridine synthesis [GO:0001522] (15 genes, 17 annotations)
                                                                                is-amRNA pseudouridine synthesis
                                                                                is-arRNA pseudouridine synthesis +
                                                                                is-asnRNA pseudouridine synthesis
                                                                                is-atRNA pseudouridine synthesis +
                                                                        is-aRNA methylation +
                                                                        is-aRNA nucleotide deletion +
                                                                        is-aRNA nucleotide insertion +
                                                                        is-arRNA modification +
                                                                        is-asnRNA modification +
                                                                        is-atRNA modification +
                                                                        is-aviral RNA editing


Gene_Ontology
        is-abiological_process
                is-ametabolic process
                        is-aprimary metabolic process
                                is-anucleobase-containing compound metabolic process
                                        is-anucleic acid metabolic process
                                                is-aRNA metabolic process
                                                        is-aRNA modification
                                                                is-abase conversion or substitution editing +
                                                                is-achloroplast RNA modification +
                                                                is-amitochondrial RNA modification +
                                                                is-amRNA modification +
                                                                is-aoxidative RNA demethylation +
                                                                is-apseudouridine synthesis [GO:0001522] (15 genes, 17 annotations)
                                                                        is-amRNA pseudouridine synthesis
                                                                        is-arRNA pseudouridine synthesis +
                                                                        is-asnRNA pseudouridine synthesis
                                                                        is-atRNA pseudouridine synthesis +
                                                                is-aRNA methylation +
                                                                is-aRNA nucleotide deletion +
                                                                is-aRNA nucleotide insertion +
                                                                is-arRNA modification +
                                                                is-asnRNA modification +
                                                                is-atRNA modification +
                                                                is-aviral RNA editing


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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory