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All Search Tools
Genes, Genome Features & Maps
Genes & Markers Query
Search for genes and genome features by symbol, name, location, gene ontology classification or phenotype.
Batch Query
Input a list of gene IDs or symbols and retrieve other database IDs and gene attributes (e.g. phenotypes, GO).
Mouse Genome Browser
Create a graphical display of genome features from regions of the mouse genome.
MouseMine
Access MGI data via InterMine.
Phenotypes, Alleles & Disease Models
Phenotypes, Alleles & Diseases Query
Search for mutations or QTL based on phenotype, human disease, mutation type, gene, or genome location.
Mammalian Phenotype (MP) Browser
Search for a phenotype term to find relevant mutant genotypes.
Human Disease (OMIM) Browser
Search for a human disease or condition term to find mouse models.
Gene Expression
Gene Expression Data Query
Search for detailed gene expression assay results.
Gene Expression Literature Query
Search for references on gene expression during development.
Mouse Developmental Anatomy Browser
Search or browse for anatomical structures; includes links to associated expression results.
EMAGE Anatomical Section Browser
Search the Edinburgh Mouse Atlas for anatomical terms and query for associated expression data.
GO Functional Annotations
GO Browser
Browse the Gene Ontology and mouse annotations in MGI.
Genes & Markers Query
Search for genes using GO terms and other gene attributes.
Batch Query
Obtain sets of MGI IDs for use in GO tools.
Strains, SNPs & Polymorphisms
SNP Query
Search for SNPs by strain(s), SNP attributes, genomic position, or associated genes.
Inbred Strain Characteristics
Browse the Listing of Inbred Strains of Mice and Rats by M. Festing.
Genealogy Chart of Inbred Strains
View the genealogy chart of inbred strains.
Sequences
MouseBLAST
Search for sequence similarity for mouse, human, or rat.
Mouse Genome Browser
Create a graphical display of genome features from regions of the mouse genome.
Batch Query
Download data for a batch of gene IDs or symbols.
References
Reference Query
Search for references (with abstracts) by title, author, journal, year, or abstract.
Gene Expression Literature Query
Search for references on gene expression during development.
Vocabularies
GO Browser
Browse the Gene Ontology and mouse annotations in MGI.
Human Disease (OMIM) Browser
Search for a human disease or condition term to find mouse models.
Mammalian Phenotype (MP) Browser
Search for a phenotype term to find relevant mutant genotypes.
Mouse Developmental Anatomy Browser
Search or browse for anatomical structures; includes links to associated expression results.
Adult Mouse Anatomy Browser
An extensive Stage 28 dictionary; not yet in use for annotation of expression data.
Other Searches
Recombinase (cre)
Get recombinase (cre) activity data for knock-in and transgene alleles.
Biochemical Pathways
View mouse genomic data in the context of metabolic cellular processes such as biosynthesis, degradation, energy production, and detoxification.
Mouse Tumor Biology
MTB provides information on the frequency, pathology, and genetics of spontaneous and induced tumors in mice.
Batch Query
Download gene/marker data for a batch of IDs or symbols.
MGI BioMart
Access MGI's mouse genetic and genomic data using BioMart.
MouseBLAST
Search for sequence similarity for mouse, human, or rat.
Mouse Genome Browser
Create a graphical display of genome features from regions of the mouse genome.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory