77 phenotypes from 11 alleles in 19 genetic backgrounds

Allelic Composition Genetic Background	Annotated Term	Reference
TcraLn1Ogu/Tcra+ involves: 129/Sv * C57BL/6	abnormal cytokine secretion	J:152041
	abnormal liver morphology	J:152041
	abnormal NK T cell morphology	J:152041
	abnormal T cell subpopulation ratio	J:152041
	decreased IgG2a level	J:152041
	decreased splenocyte number	J:152041
	decreased thymocyte number	J:152041
	increased IgG1 level	J:152041
	increased interferon-gamma secretion	J:152041
	increased interleukin-2 secretion	J:152041
	increased interleukin-4 secretion	J:152041
	increased interleukin-10 secretion	J:152041
	increased NK T cell number	J:152041
TcraLn3Jae/Tcra+ B6.Cg-TcraLn3Jae	abnormal double-negative T cell morphology	J:143006
	decreased CD4-positive, alpha-beta T cell number	J:143006
	decreased double-positive T cell number	J:143006
	increased CD8-positive, alpha-beta T cell number	J:143006
	thymus hypoplasia	J:143006
Tcratm1Cgn/Tcratm1Cgn Tg(Mx1-cre)1Cgn/0 involves: 129S7/SvEvBrd * C57BL/6 * CBA	abnormal CD4-positive, alpha beta T cell morphology	J:79298
	abnormal CD8-positive, alpha beta T cell morphology	J:79298
	abnormal memory T cell morphology	J:79298
	abnormal T cell morphology	J:79298
Tcratm1Cgn/Tcratm1Cgn Tg(Mx1-cre)1Cgn/0 involves: C57BL/6 * CBA	normal immune system phenotype	J:201417
Tcratm1Cgn/Tcratm1Mass Tg(Mx1-cre)1Cgn/0 involves: C57BL/6 * CBA	abnormal T cell physiology	J:201417
	increased T cell number	J:201417
Tcratm1Mass/Tcra+ Tg(Cd4-cre)1Cwi/0 involves: C57BL/6 * DBA/2	abnormal NK T cell morphology	J:201417
	decreased NK cell number	J:201417
	increased NK T cell number	J:201417
Tcratm1Mass/Tcra+ Tg(Nes-cre)Wme/0 involves: C57BL/6 * CBA	abnormal positive T cell selection	J:201417
	decreased NK T cell number	J:201417
	decreased thymocyte number	J:201417
	increased double-negative T cell number	J:201417
Tcratm1Mass/Tcratm1Mass involves: C57BL/6	arrested T cell differentiation	J:201417
Tcratm1Mjo/Tcra+ NOD.129P2-Tcratm1Mjo	abnormal T cell physiology	J:108590
	decreased susceptibility to autoimmune diabetes	J:108590
Tcratm1Mjo/Tcra+ SJL.129P2-Tcratm1Mjo	normal immune system phenotype	J:108590
Tcratm1Mjo/Tcratm1Mjo involves: 129P2/OlaHsd	abnormal colon morphology	J:37699
	abnormal intestinal mucosa morphology	J:37699
	abnormal neuron proliferation	J:170591
	colitis	J:37699
	decreased T cell proliferation	J:110898
	diarrhea	J:37699
	enlarged mesenteric lymph nodes	J:110898
	enlarged spleen	J:110898
	increased activated T cell number	J:110898
	increased gamma-delta T cell number	J:110898
	increased T cell number	J:110898
	rectal prolapse	J:37699
	spleen hyperplasia	J:110898
Tcratm1Mjo/Tcratm1Mjo involves: 129P2/OlaHsd * BALB/c	abnormal immune system organ morphology	J:1292
	abnormal splenic cell ratio	J:1292
	abnormal T cell morphology	J:1292
	abnormal thymus cortex morphology	J:1292
	absent thymus medulla	J:1292
	enlarged thymus cortex	J:1292
	increased activated T cell number	J:111129
	increased anti-double stranded DNA antibody level	J:111129
	increased anti-nuclear antigen antibody level	J:111129
	increased autoantibody level	J:111129
	increased B cell number	J:111129
	increased IgE level	J:111129
	increased IgG1 level	J:111129
	increased immunoglobulin level	J:111129
	small Peyer's patches	J:1292
Tcratm1Mjo/Tcratm1Mjo involves: 129P2/OlaHsd * MRL	abnormal kidney morphology	J:45448
	increased urine protein level	J:45448
Tcratm1Mjo/Tcratm1Mjo NOD.129P2-Tcratm1Mjo	increased activated T cell number	J:52940
Tcratm1Mom/Tcratm1Mom B6.129S2-Tcratm1Mom	abnormal large intestine morphology	J:135597
	abnormal response to transplant	J:91742
	colitis	J:135597
	increased mature gamma-delta T cell number	J:135597
	increased susceptibility to bacterial infection	J:106241
	rectal prolapse	J:135597
Tcratm1Mom/Tcratm1Mom involves: 129S2/SvPas	absent T cells	J:88620
Tcratm1Mom/Tcratm1Mom involves: 129S2/SvPas * C57BL/6	abnormal intestinal goblet cell morphology	J:15221
	abnormal respiratory system morphology	J:119344
	abnormal response to infection	J:119344
	arrested T cell differentiation	J:3206
	chronic diarrhea	J:15221
	colitis	J:15221
	crypts of Lieberkuhn abscesses	J:15221
	decreased CD4-positive, alpha-beta T cell number	J:3206
	decreased CD8-positive, alpha-beta T cell number	J:3206
	decreased IgG level	J:119344
	increased gamma-delta intraepithelial T cell number	J:15221
	intestinal ulcer	J:15221
	premature death	J:15221
	rectal prolapse	J:15221
Tcratm1Mom/Tcratm1Mom Tg(TcraAV19AJ33)1Shima/? involves: 129S2/SvPas * C57BL/6	abnormal NK T cell morphology	J:140924
	abnormal NK T cell physiology	J:140924
Tcratm1Slek/Tcratm1Slek Not Specified	normal immune system phenotype	J:101719
Tg(Tcra2B4)1Mmd/? involves: C3H/HeJ * C57BL/6	abnormal thymus cell ratio	J:92992
	decreased CD4-positive, alpha-beta T cell number	J:92992
	decreased double-positive T cell number	J:92992
	decreased thymocyte number	J:92992
	increased double-negative T cell number	J:92992
	increased lymphoma incidence	J:92992
Tg(TcraAI4)1Dvs/0 NOD-Tg(TcraAI4)1Dvs	abnormal CD4-positive, alpha beta T cell morphology	J:93553
	increased susceptibility to autoimmune diabetes	J:93553
Tg(TcraAV19AJ33)1Shima/? involves: 129S4/SvJae * C57BL/6	abnormal NK T cell morphology	J:112657
	abnormal NK T cell physiology	J:112657
	decreased susceptibility to experimental autoimmune encephalomyelitis	J:112657
Tg(TcraDN32D3)#Alhn/0 involves: NOD	decreased NK cell number	J:201417
	decreased thymocyte number	J:201417
	increased double-negative T cell number	J:201417