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Slc6a1
Gene Detail
 Symbol
Name
ID
Slc6a1
solute carrier family 6 (neurotransmitter transporter, GABA), member 1
MGI:95627
Synonyms Gabt, Gabt1, Gat1, GAT-1, XT-1, Xtrp1
Feature Type protein coding gene
Genetic Map
Chromosome 6
53.05 cM, cytoband E3
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr6:114282635-114317522 bp, + strand
From Ensembl annotation of GRCm38

  34888 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology 		HomoloGene:2290  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Slc6a1
Human
homologs
Human Homolog SLC6A1, solute carrier family 6 (neurotransmitter transporter, GABA), member 1
NCBI Gene ID 6529
neXtProt AC  NX_P30531
Human Synonyms  GABATHG, GABATR, GAT1
Human Chr (Location)  3p25.3; chr3:11034420-11080935 (+)  GRCh37.p10
Alleles
and
phenotypes 		All alleles(7) : Targeted(5) Gene trapped(2)
 
Homozygous hypomorphic mice display abnormal inhibitory postsynaptic currents, and abnormal GABA uptake and release.
 
Gene Ontology
(GO)
classifications 		All GO classifications: (24 annotations)
Process gamma-aminobutyric acid import, learning, ...
Component axon, cell surface, ...
Function gamma-aminobutyric acid:sodium symporter activity, neurotransmitter:sodium symporter activity, ...
External Resources: FuncBase
Expression Literature Summary: (17 records)
Data Summary: Results (434)    Tissues (175)    Images (64)
Theiler Stages: 2, 3, 19, 20, 21, 22, 23, 24, 25, 26, 28
Assay TypeResults
Immunohistochemistry 8
RNA in situ 333
RT-PCR 93
cDNA source data(74)
External Resources: Allen Institute   GENSAT   GEO   ArrayExpress
Molecular
reagents 		All nucleic(87) Genomic(2) cDNA(78) Primer pair(6) Other(1)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000030310 (Evidence)
Entrez Gene232333 (Evidence)
UniGene5260
DFCITC1575900
DoTSDT.101391027, DT.101737105
NIA Mouse Gene IndexU007286
Consensus CDS ProjectCCDS20434.1
International Mouse Knockout Project StatusSlc6a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000030310 Ensembl Gene Model | MGI Sequence Detail 34888 C57BL/6J ±  kb
transcript ENSMUST00000032454 Ensembl | MGI Sequence Detail 4292 Not Applicable 
polypeptide ENSMUSP00000032454 Ensembl | MGI Sequence Detail 599 Not Applicable 

For the selected sequences
All sequences(23) RefSeq(2) UniProt(2)
Polymorphisms RFLP(1) : SNPs(298 from dbSNP Build 128)
Protein-related
information
ResourceIDDescription
InterPro IPR000175 Sodium:neurotransmitter symporter
InterPro IPR002980 Sodium:neurotransmitter symporter, GABA, GAT-1
Protein Ontology PR:000015176 sodium- and chloride-dependent GABA transporter 1
References (Earliest) J:1492 Liu QR, et al., A family of genes encoding neurotransmitter transporters. Proc Natl Acad Sci U S A. 1992 Jul 15;89(14):6639-43
(Latest) J:181601 Bassett EA, et al., Overlapping expression patterns and redundant roles for AP-2 transcription factors in the developing mammalian retina. Dev Dyn. 2012 Apr;241(4):814-29
All references(69)
Other
accession IDs 		MGD-MRK-19419, MGD-MRK-9946, MGD-MRK-9947
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
05/08/2013
MGI 5.13 		The Jackson Laboratory