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Cacng6
Gene Detail
 Symbol
Name
ID
Cacng6
calcium channel, voltage-dependent, gamma subunit 6
MGI:1859168
Synonyms 2310033H20Rik
Feature Type protein coding gene
Genetic Map
Chromosome 7
2.00 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr7:3424662-3434940 bp, + strand
From NCBI annotation of GRCm38

  10279 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology 		HomoloGene:15427  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 2 zebrafish

Gene Tree: Cacng6
Human
homologs
Human Homolog CACNG6, calcium channel, voltage-dependent, gamma subunit 6
NCBI Gene ID 59285
neXtProt AC  NX_Q9BXT2
Human Chr (Location)  19q13.4; chr19:54495542-54515920 (+)  GRCh37.p10
Alleles
and
phenotypes 		All alleles(5) : Gene trapped(5)
 
Mice homozygous for disruptions in this gene display a normal phenotype.
 
Gene Ontology
(GO)
classifications 		All GO classifications: (11 annotations)
Process calcium ion transmembrane transport, calcium ion transport, ...
Component integral to membrane, membrane
Function calcium channel activity, voltage-gated ion channel activity
External Resources: FuncBase
Expression Literature Summary: (2 records)
Data Summary: Results (46)    Tissues (31)    Images (13)
Theiler Stages: 19, 23, 25, 28
Assay TypeResults
RNA in situ 43
RT-PCR 3
cDNA source data(5)
External Resources: GEO   ArrayExpress
Molecular
reagents 		All nucleic(6) cDNA(5) Primer pair(1)
Microarray probesets(2)
Other database
links
Ensembl Gene ModelENSMUSG00000078815 (Evidence)
Entrez Gene54378 (Evidence)
DFCITC1655135
DoTSDT.487384
NIA Mouse Gene IndexU336049, U371540
Consensus CDS ProjectCCDS39726.1
International Mouse Knockout Project StatusCacng6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 54378 NCBI Gene Model | MGI Sequence Detail 10279 C57BL/6J ±  kb
transcript NM_133183 RefSeq | MGI Sequence Detail 783 BALB/c 
polypeptide Q8VHW3 UniProt | EBI | MGI Sequence Detail 260 Not Applicable 

For the selected sequences
All sequences(19) RefSeq(2) UniProt(3)
Polymorphisms SNPs(43 from dbSNP Build 128)
Protein-related
information
ResourceIDDescription
InterPro IPR008370 Voltage-dependent calcium channel, gamma-6 subunit
InterPro IPR008368 Voltage-dependent calcium channel, gamma subunit
Protein Ontology PR:000004955 voltage-dependent calcium channel gamma-6 subunit
Graphical View of Protein Domain Structure
References (Earliest) J:61323 Klugbauer N, et al., A family of gamma-like calcium channel subunits. FEBS Lett. 2000 Mar 24;470(2):189-97
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(29)
Other
accession IDs 		MGI:1916809, MGI:2142197
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
06/05/2013
MGI 5.13 		The Jackson Laboratory