About   Help   FAQ
Cacng4
Gene Detail
 Symbol
Name
ID
Cacng4
calcium channel, voltage-dependent, gamma subunit 4
MGI:1859167
Feature Type protein coding gene
Genetic Map
Chromosome 11
70.29 cM, cytoband E1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr11:107732357-107794557 bp, - strand
From VEGA annotation of GRCm38

  62201 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology 		HomoloGene:8674  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 2 chicken; 1 zebrafish

Gene Tree: Cacng4
Human
homologs
Human Homolog CACNG4, calcium channel, voltage-dependent, gamma subunit 4
NCBI Gene ID 27092
neXtProt AC  NX_Q9UBN1
Human Chr (Location)  17q24; chr17:64960980-65029518 (+)  GRCh37.p10
Alleles
and
phenotypes 		All alleles(4) : Targeted(4)
 
Homozygous mutant mice are viable, fertile and phenotypically normal with no ataxic gait or absence seizures.
 
Gene Ontology
(GO)
classifications 		All GO classifications: (22 annotations)
Process calcium ion transmembrane transport, calcium ion transport, ...
Component alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex, integral to membrane, ...
Function calcium channel activity, ion channel activity, ...
External Resources: FuncBase
Expression Literature Summary: (5 records)
Data Summary: Results (346)    Tissues (121)    Images (91)
Theiler Stages: 17, 19, 20, 22, 23, 24, 25, 26, 28
Assay TypeResults
RNA in situ 205
In situ reporter (knock in) 90
Northern blot 3
RT-PCR 48
cDNA source data(5)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents 		All nucleic(10) Genomic(1) cDNA(6) Primer pair(3)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000003107 (Evidence)
Ensembl Gene ModelENSMUSG00000020723 (Evidence)
Entrez Gene54377 (Evidence)
DFCITC1602301, TC1639489
DoTSDT.101146564, DT.101718586, DT.87068544
NIA Mouse Gene IndexU033561
Consensus CDS ProjectCCDS25571.1
International Mouse Knockout Project StatusCacng4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000003107 VEGA Gene Model | MGI Sequence Detail 62201 C57BL/6J ±  kb
transcript OTTMUST00000006397 VEGA | MGI Sequence Detail 3500 Not Applicable 
polypeptide OTTMUSP00000003012 VEGA | MGI Sequence Detail 327 Not Applicable 

For the selected sequences
All sequences(27) RefSeq(2) UniProt(3)
Polymorphisms SNPs(284 from dbSNP Build 128)
Protein-related
information
ResourceIDDescription
InterPro IPR004031 PMP-22/EMP/MP20/Claudin
InterPro IPR005423 Voltage-dependent calcium channel, gamma-4 subunit
InterPro IPR008368 Voltage-dependent calcium channel, gamma subunit
Protein Ontology PR:000004953 voltage-dependent calcium channel gamma-4 subunit
References (Earliest) J:61749 Burgess DL, et al., Identification of three novel Ca(2+) channel gamma subunit genes reveals molecular diversification by tandem and chromosome duplication. Genome Res. 1999 Dec;9(12):1204-13
(Latest) J:188364 Schwenk J, et al., High-resolution proteomics unravel architecture and molecular diversity of native AMPA receptor complexes. Neuron. 2012 May 24;74(4):621-33
All references(38)
Other
accession IDs 		MGI:2144142, MGI:2144541
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support. 		last database update
05/08/2013
MGI 5.13 		The Jackson Laboratory