About   Help   FAQ
Pcdh10
Gene Detail
 Symbol
Name
ID
Pcdh10
protocadherin 10
MGI:1338042
Synonyms 6430521D13Rik, 6430703F07Rik, mKIAA1400, OL-pc
Feature Type protein coding gene
Genetic Map
Chromosome 3
20.35 cM, cytoband C
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr3:45378398-45434566 bp, + strand
From Ensembl annotation of GRCm38

  56169 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology 		HomoloGene:74967  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 chicken; 2 zebrafish

Gene Tree: Pcdh10
Human
homologs
Human Homolog PCDH10, protocadherin 10
NCBI Gene ID 57575
neXtProt AC  NX_Q9P2E7
Human Synonyms  OL-PCDH, PCDH19
Human Chr (Location)  4q28.3; chr4:134070470-134112732 (+)  GRCh37.p10
Alleles
and
phenotypes 		All alleles(1) : Targeted(1)
 
Mice homozygous for a reporter allele die within several weeks of birth and exhibit decreased body size and defective striatal axon growth and thalamocortical projections in the ventral telencephalon.
 
Gene Ontology
(GO)
classifications 		All GO classifications: (6 annotations)
Process cell adhesion, homophilic cell adhesion
Component integral to membrane, integral to plasma membrane, ...
External Resources: FuncBase
Expression Literature Summary: (6 records)
Data Summary: Results (116)    Tissues (18)    Images (24)
Theiler Stages: 23, 26
Assay TypeResults
RNA in situ 116
cDNA source data(61)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents 		All nucleic(61) cDNA(61)
Microarray probesets(6)
Other database
links
Ensembl Gene ModelENSMUSG00000049100 (Evidence)
Entrez Gene18526 (Evidence)
UniGene242644
DFCITC1579893, TC1587409, TC1597429, TC1598735, TC1648475
DoTSDT.101215035, DT.527509, DT.94258207, DT.97357627
NIA Mouse Gene IndexU003207
Consensus CDS ProjectCCDS50901.1, CCDS50902.1, CCDS50903.1
International Mouse Knockout Project StatusPcdh10
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000049100 Ensembl Gene Model | MGI Sequence Detail 56169 C57BL/6J ±  kb
transcript ENSMUST00000166126 Ensembl | MGI Sequence Detail 6051 Not Applicable 
polypeptide ENSMUSP00000131073 Ensembl | MGI Sequence Detail 1057 Not Applicable 

For the selected sequences
All sequences(58) RefSeq(8) UniProt(10)
Polymorphisms SNPs(12 from dbSNP Build 128)
Protein-related
information
ResourceIDDescription
InterPro IPR002126 Cadherin
InterPro IPR020894 Cadherin conserved site
InterPro IPR015919 Cadherin-like
InterPro IPR013164 Cadherin, N-terminal
Protein Ontology PR:000012342 protocadherin-10
References (Earliest) J:52412 Hirano S, et al., Expression of a novel protocadherin, OL-protocadherin, in a subset of functional systems of the developing mouse brain. J Neurosci. 1999 Feb 1;19(3):995-1005
(Latest) J:192475 Asahina H, et al., Distribution of protocadherin 9 protein in the developing mouse nervous system. Neuroscience. 2012 Dec 6;225:88-104
All references(33)
Other
accession IDs 		MGI:1923459, MGI:2444165
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support. 		last database update
05/22/2013
MGI 5.13 		The Jackson Laboratory