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H2-Q3 Pseudogene Detail
Summary
  • Symbol
    H2-Q3
  • Name
    histocompatibility 2, Q region locus 3
  • Synonyms
    Qa3
  • Feature Type
    pseudogene
  • IDs
    MGI:95932
    NCBI Gene: 625285
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:35358989-35359972 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 18.64 cM, cytoband B-C
  • Mapping Data
    8 experiments
Strain
Comparison
more
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_95932
pseudogene Chr17:35358969-35359982 (+)
129S1/SvImJ MGP_129S1SvImJ_G0040163
pseudogene Chr17:35516578-35517561 (+)
A/J MGP_AJ_G0040103
pseudogene Chr16:37984485-37985470 (+)
AKR/J MGP_AKRJ_G0040077
pseudogene Chr17:34825747-34826733 (+)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0039787
pseudogene Chr17:35184519-35185501 (+)
C57BL/6NJ MGP_C57BL6NJ_G0040731
pseudogene Chr17:36904411-36905394 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0038875
pseudogene Chr17:35242853-35243844 (+)
CBA/J MGP_CBAJ_G0039752
pseudogene Chr17:38513532-38514514 (+)
DBA/2J MGP_DBA2J_G0039938
pseudogene Chr17:32139177-34455482 (-)
FVB/NJ no annotation
LP/J MGP_LPJ_G0039994
pseudogene Chr17:35872053-35873036 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0039899
pseudogene Chr17:37312883-37313866 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0040830
pseudogene Chr17:35080559-35081543 (+)
PWK/PhJ MGP_PWKPhJ_G0038568
pseudogene Chr17:32711076-32712065 (+)
SPRET/EiJ MGP_SPRETEiJ_G0038272
pseudogene Chr17:33201735-33202721 (+)
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
This locus controls a serologically detected antigen limited predominantly Thy1+ cells of lymph node and spleen. The a allele determines presence of antigen in BALB/cJ, C56BL/6, and A; the b allele determines absence of antigen in DBA/1 and SWR.
Expression
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Sequences &
Gene Models
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  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000092253 Ensembl Gene Model | MGI Sequence Detail 984 C57BL/6J ±  kb
transcript ENSMUST00000172583 Ensembl | MGI Sequence Detail 608 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 5
    Genomic 4
    Other 1
Other
Accession IDs
less
MGD-MRK-10415, MGD-MRK-10528, MGD-MRK-13711, MGD-MRK-13722, MGI:3644098
References
more
  • Summaries
    All 20
    Phenotypes 1
  • Earliest
    J:4437 Flaherty L, et al., Further seriological analysis of the Qa antigens: analysis of an anti-H-2.28 serum. Immunogenetics. 1978;6:245-251
  • Latest
    J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
01/07/2020
MGI 6.14
The Jackson Laboratory