Gm54427 Gene Detail

Summary

• Symbol
  Gm54427
• Name
  predicted gene, 54427

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6845334
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:61909878-61910050 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  10 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845334	unclassified non-coding RNA gene	Chr15:61909878-61910050 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm54427
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm54427
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00002076665 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076665	Ensembl Gene Model | MGI Sequence Detail	173	C57BL/6J
transcript	ENSMUST00020183618	Ensembl | MGI Sequence Detail	173	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:212391 Uslu VV, et al., Long-range enhancers regulating Myc expression are required for normal facial morphogenesis. Nat Genet. 2014 Jul;46(7):753-8

TSS for Gm54427:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131427	Chr15:61909845-61909907 (+)	-2 bp