Gm44427 Gene Detail

Summary

• Symbol
  Gm44427
• Name
  predicted gene, 44427

• Feature Type
  lncRNA gene
• IDs
  MGI:5690819
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:71141783-71143103 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  58 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690819	lncRNA gene	Chr6:71141783-71143103 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006982	lincRNA gene	Chr6:71618556-71619802 (+)
A/J	MGP_AJ_G0006978	lincRNA gene	Chr6:68875248-68876529 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0006954	lincRNA gene	Chr6:68908012-68909313 (+)
C3H/HeJ	MGP_C3HHeJ_G0006971	lincRNA gene	Chr6:113397293-113398593 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007117	lincRNA gene	Chr6:73509889-73511155 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0006813	lincRNA gene	Chr6:70698644-70699934 (+)
CBA/J	MGP_CBAJ_G0006879	lincRNA gene	Chr6:76424956-76426281 (+)
DBA/2J	MGP_DBA2J_G0006899	lincRNA gene	Chr6:68247158-68248479 (+)
FVB/NJ	MGP_FVBNJ_G0006923	lincRNA gene	Chr6:67618403-67619687 (+)
LP/J	MGP_LPJ_G0006983	lincRNA gene	Chr6:71556190-71557453 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0007122	lincRNA gene	Chr6:70698173-70699461 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0006868	lincRNA gene	Chr6:71031384-71032692 (+)

Homology

• Gene Tree
  Gm44427
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000108206 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108206	Ensembl Gene Model | MGI Sequence Detail	1321	C57BL/6J
transcript	ENSMUST00000204123	Ensembl | MGI Sequence Detail	456	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;