Gm43973 Pseudogene Detail

Summary

• Symbol
  Gm43973
• Name
  predicted gene, 43973

• Feature Type
  pseudogene
• IDs
  MGI:5690365
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:131857631-131857840 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  40 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690365	pseudogene	Chr6:131857631-131857840 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013734	pseudogene	Chr6:135830441-135830650 (+)
A/J	MGP_AJ_G0013724	pseudogene	Chr6:130543441-130543764 (+)
AKR/J	MGP_AKRJ_G0013680	pseudogene	Chr6:134389360-134389569 (+)
BALB/cJ	MGP_BALBcJ_G0013705	pseudogene	Chr6:130240204-130240413 (+)
C3H/HeJ	MGP_C3HHeJ_G0013540	pseudogene	Chr6:134496377-134496586 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014098	pseudogene	Chr6:139498347-139498556 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013226	pseudogene	Chr6:134315576-134315785 (+)
CBA/J	MGP_CBAJ_G0013511	pseudogene	Chr6:144820762-144820971 (+)
DBA/2J	MGP_DBA2J_G0013595	pseudogene	Chr6:129443620-129443829 (+)
FVB/NJ	MGP_FVBNJ_G0013591	pseudogene	Chr6:128359692-128359901 (+)
LP/J	MGP_LPJ_G0013675	pseudogene	Chr6:136131583-136131792 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013605	pseudogene	Chr6:148684599-148684808 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014079	pseudogene	Chr6:134240820-134241029 (+)
PWK/PhJ	MGP_PWKPhJ_G0013031	pseudogene	Chr6:127770002-127770211 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012810	pseudogene	Chr6:132447293-132447502 (+)
WSB/EiJ	MGP_WSBEiJ_G0013279	pseudogene	Chr6:134816398-134816607 (+)

Homology

• Gene Tree
  Gm43973
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000107983 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107983	Ensembl Gene Model | MGI Sequence Detail	210	C57BL/6J
transcript	ENSMUST00000203562	Ensembl | MGI Sequence Detail	210	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;