Gm42794 Gene Detail

Summary

• Symbol
  Gm42794
• Name
  predicted gene 42794

• Feature Type
  lncRNA gene
• IDs
  MGI:5662931
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:87987748-87991277 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  55 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662931	lncRNA gene	Chr5:87987748-87991277 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004109	antisense lncRNA gene	Chr5:88800334-88803863 (-)
A/J	MGP_AJ_G0004090	antisense lncRNA gene	Chr5:85181037-85184490 (-)
AKR/J	MGP_AKRJ_G0004068	antisense lncRNA gene	Chr5:88003194-88006723 (-)
BALB/cJ	MGP_BALBcJ_G0004076	antisense lncRNA gene	Chr5:86100627-86104085 (-)
C3H/HeJ	MGP_C3HHeJ_G0004022	antisense lncRNA gene	Chr5:88404160-88408352 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004224	antisense lncRNA gene	Chr5:92458203-92461658 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003701	antisense lncRNA gene	Chr5:80795560-80799316 (-)
CAST/EiJ	MGP_CASTEiJ_G0003985	antisense lncRNA gene	Chr5:87793427-87796999 (-)
CBA/J	MGP_CBAJ_G0004016	antisense lncRNA gene	Chr5:95371474-95374999 (-)
DBA/2J	MGP_DBA2J_G0004031	antisense lncRNA gene	Chr5:85354323-85357849 (-)
FVB/NJ	MGP_FVBNJ_G0004050	antisense lncRNA gene	Chr5:84263670-84267079 (-)
LP/J	MGP_LPJ_G0004111	antisense lncRNA gene	Chr5:89213757-89217219 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004039	antisense lncRNA gene	Chr5:100446907-100461547 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004220	antisense lncRNA gene	Chr5:87562607-87566059 (-)
PWK/PhJ	MGP_PWKPhJ_G0003938	antisense lncRNA gene	Chr5:84335757-84339271 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003883	antisense lncRNA gene	Chr5:86979377-86982919 (-)
WSB/EiJ	MGP_WSBEiJ_G0004020	antisense lncRNA gene	Chr5:87956833-87960367 (-)

Homology

• Gene Tree
  Gm42794
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000104839 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104839	Ensembl Gene Model | MGI Sequence Detail	3530	C57BL/6J
transcript	ENSMUST00000197636	Ensembl | MGI Sequence Detail	835	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42794:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51655	Chr5:87991293-87991318 (-)	-29 bp
Tssr51654	Chr5:87991266-87991269 (-)	9 bp