Gm42681 Gene Detail

Summary

• Symbol
  Gm42681
• Name
  predicted gene 42681

• Feature Type
  lncRNA gene
• IDs
  MGI:5662818
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:102690495-102692105 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  2 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662818	lncRNA gene	Chr3:102690495-102692105 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003805	antisense lncRNA gene	Chr3:104018799-104023336 (-)
A/J	MGP_AJ_G0003785	antisense lncRNA gene	Chr3:100712275-100713847 (-)
AKR/J	MGP_AKRJ_G0003761	antisense lncRNA gene	Chr3:103206290-103207899 (-)
BALB/cJ	MGP_BALBcJ_G0003772	antisense lncRNA gene	Chr3:100476306-100477916 (-)
C3H/HeJ	MGP_C3HHeJ_G0003719	antisense lncRNA gene	Chr3:103506519-103507932 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003914	antisense lncRNA gene	Chr3:107867836-107870399 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003417	antisense lncRNA gene	Chr3:96881964-96883613 (-)
CAST/EiJ	MGP_CASTEiJ_G0003683	antisense lncRNA gene	Chr3:102631233-102632698 (-)
CBA/J	MGP_CBAJ_G0003714	antisense lncRNA gene	Chr3:111532199-111533814 (-)
DBA/2J	MGP_DBA2J_G0003725	antisense lncRNA gene	Chr3:99964245-99965855 (-)
FVB/NJ	MGP_FVBNJ_G0003746	antisense lncRNA gene	Chr3:97900256-97901637 (-)
LP/J	MGP_LPJ_G0003807	antisense lncRNA gene	Chr3:105359644-105362655 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0003915	antisense lncRNA gene	Chr3:102712686-102714608 (-)
PWK/PhJ	MGP_PWKPhJ_G0003639	antisense lncRNA gene	Chr3:99722404-99724010 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003583	antisense lncRNA gene	Chr3:100801691-100803136 (-)
WSB/EiJ	MGP_WSBEiJ_G0003719	antisense lncRNA gene	Chr3:103263204-103265245 (-)

Homology

• Gene Tree
  Gm42681
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000105855 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105855	Ensembl Gene Model | MGI Sequence Detail	1611	C57BL/6J
transcript	ENSMUST00000197999	Ensembl | MGI Sequence Detail	1611	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;