Gm42511 Pseudogene Detail

Summary

• Symbol
  Gm42511
• Name
  predicted gene 42511

• Feature Type
  pseudogene
• IDs
  MGI:5662648
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:57850339-57850572 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  12 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662648	pseudogene	Chr3:57850339-57850572 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012162	pseudogene	Chr3:56744533-56744766 (+)
A/J	MGP_AJ_G0012155	pseudogene	Chr3:54997294-54997527 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0012135	pseudogene	Chr3:54818621-54818854 (+)
C3H/HeJ	MGP_C3HHeJ_G0012011	pseudogene	Chr3:56339391-56339624 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012445	pseudogene	Chr3:58845353-58845586 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010863	pseudogene	Chr3:51374228-51374476 (+)
CAST/EiJ	MGP_CASTEiJ_G0011787	pseudogene	Chr3:56503615-56503848 (+)
CBA/J	MGP_CBAJ_G0011985	pseudogene	Chr3:60809347-60809580 (+)
DBA/2J	MGP_DBA2J_G0012041	pseudogene	Chr3:54495571-54495804 (+)
FVB/NJ	MGP_FVBNJ_G0012044	pseudogene	Chr3:53469236-53469469 (+)
LP/J	MGP_LPJ_G0012109	pseudogene	Chr3:57503943-57504176 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012047	pseudogene	Chr3:64912805-64913038 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012453	pseudogene	Chr3:56087605-56087838 (+)
PWK/PhJ	MGP_PWKPhJ_G0011632	pseudogene	Chr3:54144660-54144893 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011447	pseudogene	Chr3:55758612-55758851 (+)
WSB/EiJ	MGP_WSBEiJ_G0011819	pseudogene	Chr3:56159858-56160091 (+)

Homology

• Gene Tree
  Gm42511
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm42511
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000104730 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104730	Ensembl Gene Model | MGI Sequence Detail	234	C57BL/6J
transcript	ENSMUST00000196160	Ensembl | MGI Sequence Detail	234	Not Applicable

References

• Summaries
  All 4

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm42511:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29193	Chr3:57850309-57850320 (+)	-24 bp