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Gm38039 Gene Detail
Summary
  • Symbol
    Gm38039
  • Name
    predicted gene, 38039
  • Feature Type
    lncRNA gene
  • IDs
    MGI:5611267
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr1:159755960-159759296 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 1, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    92 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5611267
lncRNA gene Chr1:159755960-159759296 (-)
129S1/SvImJ MGP_129S1SvImJ_G0002771
antisense lncRNA gene Chr1:165102168-165105507 (-)
A/J MGP_AJ_G0002747
antisense lncRNA gene Chr1:158409772-158413095 (-)
AKR/J MGP_AKRJ_G0002728
antisense lncRNA gene Chr1:163237267-163240603 (-)
BALB/cJ MGP_BALBcJ_G0002734
antisense lncRNA gene Chr1:158962263-158965602 (-)
C3H/HeJ MGP_C3HHeJ_G0002692
antisense lncRNA gene Chr1:163412882-163416234 (-)
C57BL/6NJ MGP_C57BL6NJ_G0002877
antisense lncRNA gene Chr1:170727515-170730851 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0002424
antisense lncRNA gene Chr1:150566396-150569706 (-)
CAST/EiJ MGP_CASTEiJ_G0002665
antisense lncRNA gene Chr1:163045963-163049308 (-)
CBA/J MGP_CBAJ_G0002688
antisense lncRNA gene Chr1:176768351-176771707 (-)
DBA/2J MGP_DBA2J_G0002694
antisense lncRNA gene Chr1:157386195-157389534 (-)
FVB/NJ MGP_FVBNJ_G0002714
antisense lncRNA gene Chr1:155797249-155800587 (-)
LP/J MGP_LPJ_G0002772
antisense lncRNA gene Chr1:166215133-166218476 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0002704
antisense lncRNA gene Chr1:184277587-184280923 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0002881
antisense lncRNA gene Chr1:163065777-163069116 (-)
PWK/PhJ MGP_PWKPhJ_G0002622
antisense lncRNA gene Chr1:156526312-156529708 (-)
SPRET/EiJ MGP_SPRETEiJ_G0002573
antisense lncRNA gene Chr1:161905624-161910134 (-)
WSB/EiJ MGP_WSBEiJ_G0002694
antisense lncRNA gene Chr1:163241371-163244716 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000103719 Ensembl Gene Model | MGI Sequence Detail 3337 C57BL/6J ±  kb
transcript ENSMUST00000195328 Ensembl | MGI Sequence Detail 443 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 3
    Phenotypes 2
  • Earliest
    J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
  • Latest
    J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/12/2024
MGI 6.23
The Jackson Laboratory