Gm28373 Gene Detail

Summary

• Symbol
  Gm28373
• Name
  predicted gene 28373

• Feature Type
  lncRNA gene
• IDs
  MGI:5579079
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:102639276-102693592 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic

Strain
Comparison

• SNPs within 2kb
  260 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579079	lncRNA gene	Chr12:102639276-102693592 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015239	unclassified non-coding RNA gene	Chr12:104319749-104383584 (-)
A/J	MGP_AJ_G0015213	unclassified non-coding RNA gene	Chr12:100312308-100366864 (-)
AKR/J	MGP_AKRJ_G0015176	unclassified non-coding RNA gene	Chr12:103154428-103208484 (-)
BALB/cJ	MGP_BALBcJ_G0015175	unclassified non-coding RNA gene	Chr12:100663707-100718512 (-)
C3H/HeJ	MGP_C3HHeJ_G0014999	unclassified non-coding RNA gene	Chr12:103623543-103679145 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015632	unclassified non-coding RNA gene	Chr12:107561260-107618677 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013374	unclassified non-coding RNA gene	Chr12:97325615-97380181 (-)
CAST/EiJ	MGP_CASTEiJ_G0014552	unclassified non-coding RNA gene	Chr12:98459115-98523883 (-)
CBA/J	MGP_CBAJ_G0014978	unclassified non-coding RNA gene	Chr12:111556713-111623319 (-)
DBA/2J	MGP_DBA2J_G0015071	unclassified non-coding RNA gene	Chr12:99826901-99884797 (-)
FVB/NJ	MGP_FVBNJ_G0015082	unclassified non-coding RNA gene	Chr12:98558619-98616827 (-)
LP/J	MGP_LPJ_G0015152	unclassified non-coding RNA gene	Chr12:104161257-104224868 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015109	unclassified non-coding RNA gene	Chr12:115025041-115082521 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015671	unclassified non-coding RNA gene	Chr12:102662670-102722268 (-)
PWK/PhJ	MGP_PWKPhJ_G0014344	unclassified non-coding RNA gene	Chr12:94385406-94442195 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014131	unclassified non-coding RNA gene	Chr12:96847837-96916353 (-)
WSB/EiJ	MGP_WSBEiJ_G0014655	unclassified non-coding RNA gene	Chr12:103553007-103611156 (-)

Homology

• Gene Tree
  Gm28373
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  58
• Chemically induced (other)
  1
• Gene trapped
  57
• Genomic Mutations
  1 involving Gm28373
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000096751 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096751	Ensembl Gene Model | MGI Sequence Detail	54317	C57BL/6J
transcript	ENSMUST00000178129	Ensembl | MGI Sequence Detail	2724	Not Applicable

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm28373:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr117441	Chr12:102693591-102693613 (-)	-10 bp